RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 UNGP13051 313 aaPredicted RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 RPA4Q13156 261 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 SEC23BQ15437 767 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 RAB30Q15771 203 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 AADACL4Q5VUY2 407 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 OR56A1Q8NGH5 318 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 WDR20Q8TBZ3 569 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 GATAD2BQ8WXI9 593 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 TMEM80Q96HE8 168 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 TPT1P8Q9HAU6 139 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 ASB6Q9NWX5 421 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 MS4A12Q9NXJ0 267 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 DLX3O60479 287 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 CREG1O75629 220 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 SLC6A6P31641 620 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 TMEM115Q12893 351 aaPredicted RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 PTP4A2Q12974 167 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 LRIT3Q3SXY7 679 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 ZNF100Q8IYN0 542 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 SLC7A5P1Q8MH63 180 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 PKP2Q99959 881 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 INSL5Q9Y5Q6 135 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 LEFTY1O75610 366 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 GALTP07902 379 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 RAB15P59190 212 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 TMEM236Q5W0B7 351 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 OSTM1Q86WC4 334 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 C7orf34Q96L11 122 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 FZD8Q9H461 694 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 SRA1Q9HD15 236 aaKnown RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 COQ3Q9NZJ6 369 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 KDELR3O43731 214 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 FBLP22087 321 aaKnown RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 OTX2P32243 289 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 POU6F2P78424 691 aaPredicted RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 HNRNPA0Q13151 305 aaKnown RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 ZNF761Q86XN6 746 aaPredicted RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 NPAS3Q8IXF0 933 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 MCHR1Q99705 422 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 TMEM109Q9BVC6 243 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 ENAMQ9NRM1 1142 aa12.17□□□□□ -0.46
SDC3-201ENST00000336798 MYEF2Q9P2K5 600 aaKnown RBP12.17□□□□□ -0.46
SDC3-201ENST00000336798 A0A1B0GVC2 190 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 FBP2O00757 339 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 MAFKO60675 156 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 CLIC3O95833 236 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 CYBRD1Q53TN4 286 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 SLC36A4Q6YBV0 504 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 TRAPPC6BQ86SZ2 158 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 IGFN1Q86VF2 1251 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 CENPSQ8N2Z9 138 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 NAT8LQ8N9F0 302 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 BRI3BPQ8WY22 251 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 POLE4Q9NR33 117 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 OAS1P00973 400 aaKnown RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 STOMP27105 288 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 HNRNPKP61978 463 aaKnown RBP eCLIP12.16□□□□□ -0.46
SDC3-201ENST00000336798 CCDC58Q4VC31 144 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 MAN2C1Q9NTJ4 1040 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 TAS2R10Q9NYW0 307 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 NLGN3Q9NZ94 848 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 PPP4R1LQ9P1A2 415 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 B4GALT6Q9UBX8 382 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 ZFR2Q9UPR6 939 aaKnown RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 FARS2O95363 451 aaKnown RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 TFPTP0C1Z6 253 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 ARHGAP1Q07960 439 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 TUBB3Q13509 450 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 SHQ1Q6PI26 577 aaKnown RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 TMEM107Q6UX40 140 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 TPRG1Q6ZUI0 275 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 SCGB1C1Q8TD33 95 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 KLHL15Q96M94 604 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 TIGARQ9NQ88 270 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 SLC2A4RGQ9NR83 387 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 KCNN3Q9UGI6 736 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 ZNF517Q6ZMY9 492 aaPredicted RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 OR13C3Q8NGS6 347 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 LIN28AQ9H9Z2 209 aaKnown RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 SH3BGRL2Q9UJC5 107 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 SARDHQ9UL12 918 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 H3BSA7 217 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 OXSR1O95747 527 aaPredicted RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 SNHG28P0DPA3 235 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 GTF2F2P13984 249 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 GSK3BP49841 420 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 CTBP2P56545 445 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 LRFN4Q6PJG9 635 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 Q6ZVL8 140 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 DPY19L4Q7Z388 723 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 OR51A7Q8NH64 312 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 GNPDA2Q8TDQ7 276 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 MAFIPQ8WZ33 124 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 BIRC7Q96CA5 298 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 HSPA12BQ96MM6 686 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 ZNF599Q96NL3 588 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 ACTL8Q9H568 366 aa12.16□□□□□ -0.46
SDC3-201ENST00000336798 DNMT3AQ9Y6K1 912 aaPredicted RBP12.16□□□□□ -0.46
SDC3-201ENST00000336798 A0A0A6YYH2 397 aa12.15□□□□□ -0.46
SDC3-201ENST00000336798 A6NJ64 397 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms