RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 IDH3BO43837 385 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ABLIM3O94929 683 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ARHGEF15O94989 841 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 SNX4O95219 450 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 IFNA14P01570 189 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 IL3P08700 152 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 CYP2A6P11509 494 aaPredicted RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 ENDOUP21128 410 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 SLC15A1P46059 708 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 MANFP55145 182 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 RAE1P78406 368 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 ZNF763Q0D2J5 394 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 GDPD3Q7L5L3 318 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 IQCF1Q8N6M8 205 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 SUN5Q8TC36 379 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 EXOSC8Q96B26 276 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 TRNT1Q96Q11 434 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 ASPNQ9BXN1 380 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 POLR2J2Q9GZM3 115 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 NEK6Q9HC98 313 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 HCFC1R1Q9NWW0 138 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 BOLA1Q9Y3E2 137 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 GCM2O75603 506 aaPredicted RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 GSTM1P09488 218 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 CHRNB1P11230 501 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ZNF8P17098 575 aaPredicted RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 PCGF2P35227 344 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 UGT2B15P54855 530 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 NKX3-2P78367 333 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 OLR1P78380 273 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 FADDQ13158 208 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ZNF181Q2M3W8 571 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 BCL7AQ4VC05 210 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ASTLQ6HA08 431 aaPredicted RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 TCEANCQ8N8B7 351 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 OR9Q1Q8NGQ5 310 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 UBASH3BQ8TF42 649 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ZNF296Q8WUU4 475 aaPredicted RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 XAGE5Q8WWM1 108 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 NRTNQ99748 197 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 NMNAT1Q9HAN9 279 aaPredicted RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 SH2B3Q9UQQ2 575 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 ANGPT4Q9Y264 503 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 WBP11Q9Y2W2 641 aaKnown RBP12.1□□□□□ -0.47
LIG1-201ENST00000263274 GPSM3Q9Y4H4 160 aa12.1□□□□□ -0.47
LIG1-201ENST00000263274 TNFRSF10AO00220 468 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PLK4O00444 970 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ARHGAP33O14559 1287 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ENTPD6O75354 484 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 CSF2P04141 144 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 POLR2EP19388 210 aaKnown RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 E2F2Q14209 437 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 GRIN2CQ14957 1233 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 SPIN4Q56A73 249 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 TYW3Q6IPR3 259 aaKnown RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 MSANTD1Q6ZTZ1 278 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ZNF480Q8WV37 535 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 BTBD2Q9BX70 525 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PRRG3Q9BZD7 231 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 CPNE5Q9HCH3 593 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ASF1AQ9Y294 204 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PCDHGA2Q9Y5H1 932 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 C5orf42Q9H799 3197 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 CCRL2O00421 344 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 AP2A2O94973 939 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 FHP07954 510 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ALPPL2P10696 532 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 CHMP24386 653 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 TARDBPQ13148 414 aaKnown RBP eCLIP12.09□□□□□ -0.471e-7■■■■□ 25.2
LIG1-201ENST00000263274 LIPKQ5VXJ0 399 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 GRHL2Q6ISB3 625 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PNCKQ6P2M8 343 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 MAMSTRQ6ZN01 415 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.09□□□□□ -0.47
LIG1-201ENST00000263274 LILRB4Q8NHJ6 448 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 GEMIN6Q8WXD5 167 aaKnown RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 NACC2Q96BF6 587 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PITX2Q99697 317 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PIP5K1AQ99755 562 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 PSD2Q9BQI7 771 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 YIPF4Q9BSR8 244 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 SLC46A2Q9BY10 475 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ZDHHC4Q9NPG8 344 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 GIMAP4Q9NUV9 329 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 GPATCH2Q9NW75 528 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 SPATA6Q9NWH7 488 aaPredicted RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 MALT1Q9UDY8 824 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 SRRDQ9UH36 339 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 DNMT3AQ9Y6K1 912 aaPredicted RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 AP3D1O14617 1153 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 HOXB9P17482 250 aaPredicted RBP12.09□□□□□ -0.47
LIG1-201ENST00000263274 PTNP21246 168 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ACVR2AP27037 513 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 GPC1P35052 558 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 CRISP1P54107 249 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 ZNF45Q02386 682 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 SP140Q13342 867 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 TIMM50Q3ZCQ8 353 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 RAET1GQ6H3X3 334 aa12.09□□□□□ -0.47
LIG1-201ENST00000263274 TSEN54Q7Z6J9 526 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms