RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 MGME1Q9BQP7 344 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 TMED9Q9BVK6 235 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 P2RY12Q9H244 342 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 NMNAT1Q9HAN9 279 aaPredicted RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 FKBP14Q9NWM8 211 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 TRAPPC4Q9Y296 219 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 SLC9A8Q9Y2E8 581 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 GPR52Q9Y2T5 361 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 CDH23Q9H251 3354 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 TRBV4-1A0A0J9YWV2 114 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 C17orf102A2RUQ5 167 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 M0QZ92 97 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 TLR4O00206 839 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 B4GALT3O60512 393 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 SCG5P05408 212 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 ARSBP15848 533 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 RPA4Q13156 261 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 ARHGEF6Q15052 776 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 TTLL9Q3SXZ7 439 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 GLYR1Q49A26 553 aaPredicted RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 ATP13A5Q4VNC0 1218 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 MTFR2Q6P444 385 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 NPLOC4Q8TAT6 608 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 ART5Q96L15 291 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 PARK7Q99497 189 aaKnown RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 KATNBL1Q9H079 304 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 PLEKHB1Q9UF11 243 aaPredicted RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 C2orf92A0A1B0GVN3 265 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 MANSC4A6NHS7 340 aaPredicted RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 ATP6V1G2-DDX39BF2Z307 99 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 MRPS14O60783 128 aaKnown RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 RHOCP08134 193 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 ANXA8P13928 327 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 MYL12AP19105 171 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 OR1G1P47890 313 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 LIMK1P53667 647 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 CACNG1Q06432 222 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 SNTA1Q13424 505 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 CHRNA6Q15825 494 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 CPTPQ5TA50 214 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 OLIG3Q7RTU3 272 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 SZRD1Q7Z422 152 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 ZNF280BQ86YH2 543 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 HS6ST3Q8IZP7 471 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 C1orf52Q8N6N3 182 aaKnown RBP13.75□□□□□ -0.21
SDC1-201ENST00000254351 C11orf65Q8NCR3 313 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 OTULINQ96BN8 352 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 TINF2Q9BSI4 451 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 SPATA9Q9BWV2 254 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 PDFQ9HBH1 243 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 CD84Q9UIB8 345 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 STUB1Q9UNE7 303 aa13.75□□□□□ -0.21
SDC1-201ENST00000254351 ZNF670-ZNF695F2Z2N8 137 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 PRRG1O14668 218 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 LYRM1O43325 122 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 HRGP04196 525 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 ALPPP05187 535 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 PRPS2P11908 318 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 HTR7P34969 479 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 IRF8Q02556 426 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 CSTF1Q05048 431 aaKnown RBP13.74□□□□□ -0.21
SDC1-201ENST00000254351 TARDBPQ13148 414 aaKnown RBP eCLIP13.74□□□□□ -0.21
SDC1-201ENST00000254351 FCN2Q15485 313 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 IFI44LQ53G44 452 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 XKR6Q5GH73 641 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 FRG2Q64ET8 278 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 VRK3Q8IV63 474 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 GALNT11Q8NCW6 608 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 ZNF431Q8TF32 576 aaPredicted RBP13.74□□□□□ -0.21
SDC1-201ENST00000254351 PEX13Q92968 403 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 NACC2Q96BF6 587 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 OTUB1Q96FW1 271 aaPredicted RBP13.74□□□□□ -0.21
SDC1-201ENST00000254351 FRG2BQ96QU4 278 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 RAD9AQ99638 391 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 TSSK6Q9BXA6 273 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 B3GNT4Q9C0J1 378 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 PCDHB11Q9Y5F2 797 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 MGAT4DA6NG13 374 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 FADS2P1A8MWK0 482 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 PDE9AO76083 593 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 ETHE1O95571 254 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 F2P00734 622 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 ANXA4P09525 319 aaPredicted RBP13.74□□□□□ -0.21
SDC1-201ENST00000254351 IL1RNP18510 177 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 CD79BP40259 229 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 CRISP1P54107 249 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 MAB21L1Q13394 359 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 XKRXQ6PP77 449 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 DEF8Q6ZN54 512 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 ANKS3Q6ZW76 656 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 CHMP1BQ7LBR1 199 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 RBM45Q8IUH3 476 aaKnown RBP13.74□□□□□ -0.21
SDC1-201ENST00000254351 SYNPOQ8N3V7 929 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 DCLRE1CQ96SD1 692 aaKnown RBP13.74□□□□□ -0.21
SDC1-201ENST00000254351 TMEM45AQ9NWC5 275 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 FLRT1Q9NZU1 646 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 TRPS1Q9UHF7 1281 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 AP3M1Q9Y2T2 418 aa13.74□□□□□ -0.21
SDC1-201ENST00000254351 LOC105369274A0A096LPK9 316 aa13.73□□□□□ -0.21
SDC1-201ENST00000254351 MBLAC1A4D2B0 266 aaPredicted RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms