RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 RAB43Q86YS6 212 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 TRIM48Q8IWZ4 208 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 VPS37AQ8NEZ2 397 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 FLCNQ8NFG4 579 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 ST13P5Q8NFI4 369 aaPredicted RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 OR2AP1Q8NGE2 309 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 WDR48Q8TAF3 677 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 NEIL2Q969S2 332 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 TMEM203Q969S6 136 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 TMCO6Q96DC7 493 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 NECTIN4Q96NY8 510 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 DEPDC7Q96QD5 511 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 LYSMD1Q96S90 227 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 WRAP53Q9BUR4 548 aaKnown RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 SPATA9Q9BWV2 254 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 PRRG3Q9BZD7 231 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 MIXL1Q9H2W2 232 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 ABCB9Q9NP78 766 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 DYRK4Q9NR20 520 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 STOX2Q9P2F5 926 aaPredicted RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 KLHL20Q9Y2M5 609 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 TMA7Q9Y2S6 64 aaKnown RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 PCDHB7Q9Y5E2 793 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 PCDHGB2Q9Y5G2 931 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 DOCK6Q96HP0 2047 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 XIRP2A4UGR9 3374 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 TRBC2A0A5B9 178 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 HNF4AP41235 474 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 SPINT3P49223 89 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 HMGA2P52926 109 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 GALK2Q01415 458 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 MEF2AQ02078 507 aaPredicted RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 TEKQ02763 1124 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 TRIM60Q495X7 471 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 RBM45Q8IUH3 476 aaKnown RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.85□□□□□ -0.51
NUP88-201ENST00000225696 C2orf15Q8WU43 125 aaKnown RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 HHIPL1Q96JK4 782 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 C3orf14Q9HBI5 128 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 ZNF334Q9HCZ1 680 aaPredicted RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 CLN6Q9NWW5 311 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 CNOT2Q9NZN8 540 aaKnown RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 KLHL42Q9P2K6 505 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 CRNNQ9UBG3 495 aaPredicted RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 B4GALT6Q9UBX8 382 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 REV1Q9UBZ9 1251 aa11.85□□□□□ -0.51
NUP88-201ENST00000225696 ZNF282Q9UDV7 671 aaPredicted RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 YARS2Q9Y2Z4 477 aaKnown RBP11.85□□□□□ -0.51
NUP88-201ENST00000225696 IGSF6O95976 241 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 MPC1LP0DKB6 136 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 PDHA2P29803 388 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 TIA1P31483 386 aaKnown RBP eCLIP11.84□□□□□ -0.51
NUP88-201ENST00000225696 AP1S2P56377 157 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 LSM11P83369 360 aaKnown RBP eCLIP11.84□□□□□ -0.51
NUP88-201ENST00000225696 SPHARQ15513 63 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 TAF12Q16514 161 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 TIMM50Q3ZCQ8 353 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 CCDC58Q4VC31 144 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 MPPE1Q53F39 396 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 TOR1AIP1Q5JTV8 583 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ANXA8L1Q5VT79 327 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 GRHL2Q6ISB3 625 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 Q6ZNB5 142 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ZNF438Q7Z4V0 828 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 RASGRP3Q8IV61 690 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 CHST14Q8NCH0 376 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 OR52N2Q8NGI0 321 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 C9orf43Q8TAL5 461 aaPredicted RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 OVCA2Q8WZ82 227 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ZIC5Q96T25 663 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 SORBS1Q9BX66 1292 aaKnown RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 C11orf54Q9H0W9 315 aaPredicted RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 OR51B5Q9H339 312 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ZDHHC6Q9H6R6 413 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 CORO2BQ9UQ03 480 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 SH3D21A4FU49 640 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 TBKBP1A7MCY6 615 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 NOTOA8MTQ0 251 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 KPNA5O15131 536 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 CDRT1O95170 752 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 APOL3O95236 402 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 TGFB1P01137 390 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 CSF3P09919 207 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 MSL3P1P0C860 447 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 PPIBP23284 216 aaKnown RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 IMPA1P29218 277 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ASMTP46597 345 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 ZNF157P51786 506 aaPredicted RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 ACLYP53396 1101 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 CTSCP53634 463 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 PCBP3P57721 371 aaKnown RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 CD83Q01151 205 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 PRKCZQ05513 592 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 TSTA3Q13630 321 aaPredicted RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 LARS2Q15031 903 aaKnown RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 GLYR1Q49A26 553 aaPredicted RBP11.84□□□□□ -0.51
NUP88-201ENST00000225696 PLEKHS1Q5SXH7 462 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 PAMR1Q6UXH9 720 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 DPY19L3Q6ZPD9 716 aa11.84□□□□□ -0.51
NUP88-201ENST00000225696 CCDC149Q6ZUS6 474 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 123.5 ms