RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PCDHB1Q9Y5F3 818 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DIP2AQ14689 1571 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TEX51A0A1B0GUA7 166 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RIIAD1A6NNX1 92 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 A8MVJ9 347 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FBP2O00757 339 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR7A17O14581 309 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PGAM2P15259 253 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ASMTP46597 345 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CXCL12P48061 93 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RFX5P48382 616 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CD97P48960 835 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 P2RX1P51575 399 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 AFF3P51826 1226 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PPP1CAP62136 330 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CDK18Q07002 472 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RAB11BQ15907 218 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SPATS1Q496A3 300 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TTC32Q5I0X7 151 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLX4IPQ5VYV7 408 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LINGO2Q7L985 606 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LILRB4Q8NHJ6 448 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 BPIFB1Q8TDL5 484 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CREB3L4Q8TEY5 395 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 AP2M1Q96CW1 435 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LRR1Q96L50 414 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RIT2Q99578 217 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 P2RY13Q9BPV8 354 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TREX2Q9BQ50 279 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZDHHC6Q9H6R6 413 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PATZ1Q9HBE1 687 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FAM86C1Q9NVL1 165 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 GPATCH2Q9NW75 528 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TAS2R7Q9NYW3 318 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CLEC1BQ9P126 229 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF230Q9UIE0 474 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ADGRL3Q9HAR2 1447 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LCHNA4D1U4 455 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 STBD1O95210 358 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TSPAN15O95858 294 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 IFNA21P01568 189 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 EPOP01588 193 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 HRH2P25021 359 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TARDBPQ13148 414 aaKnown RBP eCLIP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 NAE1Q13564 534 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TRAM2Q15035 370 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 N4BP2L1Q5TBK1 243 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ARHGAP40Q5TG30 622 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DCLRE1AQ6PJP8 1040 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF773Q6PK81 442 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 BAIAP2L2Q6UXY1 529 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF782Q6ZMW2 699 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SLC24A5Q71RS6 500 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF767PQ75MW2 155 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CACUL1Q86Y37 369 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 OR4F6Q8NGB9 312 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SMARCD2Q92925 531 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MTFMTQ96DP5 389 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ADAD1Q96M93 576 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 LPAR4Q99677 370 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CLSTN3Q9BQT9 956 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SULT4A1Q9BR01 284 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ADAM33Q9BZ11 813 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ACTR8Q9H981 624 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 RNF150Q9ULK6 438 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 KCNS2Q9ULS6 477 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 URGCP-MRPS24S4R325 110 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TMEM94Q12767 1356 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CNTNAP4Q9C0A0 1308 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TICRRQ7Z2Z1 1910 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 K7EPK0 472 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SYN3O14994 580 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TXNL1O43396 289 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 NPHS1O60500 1241 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 DPM1O60762 260 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SAGP10523 405 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 EPXP11678 715 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 TNFSF8P32971 234 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 APLNRP35414 380 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FOLR3P41439 243 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ETV1P50549 477 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 STEAP1BQ6NZ63 245 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MFSD7Q6UXD7 560 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CEACAM20Q6UY09 585 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 WDR53Q7Z5U6 358 aaPredicted RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SATL1Q86VE3 508 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FAM109AQ8N4B1 249 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FAM71E2Q8N5Q1 922 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 KAT5Q92993 513 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 HPDLQ96IR7 371 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ARHGAP39Q9C0H5 1083 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 CREBZFQ9NS37 354 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 THYN1Q9P016 225 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 MYOTQ9UBF9 498 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF346Q9UL40 294 aaKnown RBP2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PLEKHM1Q9Y4G2 1056 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 PTPRMP28827 1452 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 FAM205AQ6ZU69 1335 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 ANHXE9PGG2 379 aa2.69□□□□□ -1.98
SCN1A-219ENST00000641575 SYT5O00445 386 aa2.69□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms