RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 ZWINTO95229 277 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 RECKO95980 971 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 KRT6AP02538 564 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 KRT6BP04259 564 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 ENO1P06733 434 aaKnown RBP13.53□□□□□ -0.24
USP3-205ENST00000557884 FHP07954 510 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 RNH1P13489 461 aaKnown RBP13.53□□□□□ -0.24
USP3-205ENST00000557884 ATP5A1P25705 553 aaKnown RBP13.53□□□□□ -0.24
USP3-205ENST00000557884 KRT6CP48668 564 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 NAA20P61599 178 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 CHAF1BQ13112 559 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 AP5B1Q2VPB7 878 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 AGBL2Q5U5Z8 902 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 BORAQ6PGQ7 559 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 SCIMPQ6UWF3 145 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 ACOT4Q8N9L9 421 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 SRFBP1Q8NEF9 429 aaKnown RBP13.53□□□□□ -0.24
USP3-205ENST00000557884 SREK1Q8WXA9 508 aaKnown RBP13.53□□□□□ -0.24
USP3-205ENST00000557884 C8orf44Q96CB5 159 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 CATSPER2Q96P56 530 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 SERINC2Q96SA4 455 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 SERPINI1Q99574 410 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 TBCDQ9BTW9 1192 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 SEMA3GQ9NS98 782 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 SLC12A4Q9UP95 1085 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 FIS1Q9Y3D6 152 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 HS3ST3B1Q9Y662 390 aa13.53□□□□□ -0.24
USP3-205ENST00000557884 PEX12O00623 359 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 SOCS6O14544 535 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 NPHS1O60500 1241 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 ALOX12BO75342 701 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 EEDO75530 441 aaKnown RBP13.52□□□□□ -0.25
USP3-205ENST00000557884 SASH3O75995 380 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 CHRNGP07510 517 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 HIST1H1TP22492 207 aaPredicted RBP13.52□□□□□ -0.25
USP3-205ENST00000557884 MMP11P24347 488 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 SERPINB3P29508 390 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 EEF1A2Q05639 463 aaKnown RBP13.52□□□□□ -0.25
USP3-205ENST00000557884 C10orf62Q5T681 223 aaPredicted RBP13.52□□□□□ -0.25
USP3-205ENST00000557884 HHATQ5VTY9 493 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 CLEC6AQ6EIG7 209 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 OR4C11Q6IEV9 310 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 CUZD1Q86UP6 607 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 FAM47BQ8NA70 645 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 PPP1R14CQ8TAE6 165 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 THAP4Q8WY91 577 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 TSLPQ969D9 159 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 CNDP1Q96KN2 507 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 OR1F2PQ96R84 312 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 CSF3RQ99062 836 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 MRPL1Q9BYD6 325 aaKnown RBP13.52□□□□□ -0.25
USP3-205ENST00000557884 CLK4Q9HAZ1 481 aaKnown RBP13.52□□□□□ -0.25
USP3-205ENST00000557884 LANCL2Q9NS86 450 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 P4HTMQ9NXG6 502 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 FBXL4Q9UKA2 621 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 FBXW2Q9UKT8 454 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 CHD6Q8TD26 2715 aa13.52□□□□□ -0.25
USP3-205ENST00000557884 ULK1O75385 1050 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 DNAJB5O75953 348 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 SEMA3DO95025 777 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 IGHEP01854 428 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 GBAP04062 536 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 DHRS4L1P0CG22 281 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 NEFHP12036 1026 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 CHN1P15882 459 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 BGNP21810 368 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 LIM2P55344 173 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 RAB38P57729 211 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 RHDQ02161 417 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 SLAMF1Q13291 335 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 CUL3Q13618 768 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 RCN2Q14257 317 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 ABRAXAS2Q15018 415 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 CHI3L2Q15782 390 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 TUBB8Q3ZCM7 444 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 TTMPQ5BVD1 217 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 ARL13AQ5H913 290 aaPredicted RBP13.51□□□□□ -0.25
USP3-205ENST00000557884 KIRREL2Q6UWL6 708 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 LANCL3Q6ZV70 420 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 GOLGA6L1Q8N7Z2 621 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 TMEM52Q8NDY8 209 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 AGR3Q8TD06 166 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 APOBEC4Q8WW27 367 aaKnown RBP13.51□□□□□ -0.25
USP3-205ENST00000557884 TTC9Q92623 222 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 MAPKAP1Q9BPZ7 522 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 TRMOQ9BU70 441 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 NPLQ9BXD5 320 aaPredicted RBP13.51□□□□□ -0.25
USP3-205ENST00000557884 ZNF717Q9BY31 904 aaPredicted RBP13.51□□□□□ -0.25
USP3-205ENST00000557884 ROGDIQ9GZN7 287 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 VIPAS39Q9H9C1 493 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 PSD3Q9NYI0 1048 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 RALYQ9UKM9 306 aaKnown RBP13.51□□□□□ -0.25
USP3-205ENST00000557884 PPT2Q9UMR5 302 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 KCNMB2Q9Y691 235 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 IGSF10Q6WRI0 2623 aa13.51□□□□□ -0.25
USP3-205ENST00000557884 SMG1Q96Q15 3661 aaKnown RBP13.51□□□□□ -0.25
USP3-205ENST00000557884 TMEM233B4DJY2 109 aa13.5□□□□□ -0.25
USP3-205ENST00000557884 BIRC5O15392 142 aa13.5□□□□□ -0.25
USP3-205ENST00000557884 SCELO95171 688 aa13.5□□□□□ -0.25
USP3-205ENST00000557884 ITGB2P05107 769 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms