RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 AMD1P17707 334 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 DDX5P17844 614 aaKnown RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 XPAP23025 273 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SDC2P34741 201 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 CD79BP40259 229 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PTGER3P43115 390 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MAPK12P53778 367 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 CYP4F8P98187 520 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TARDBPQ13148 414 aaKnown RBP eCLIP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 LRRC32Q14392 662 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 GPR19Q15760 415 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MORN1Q5T089 497 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 HECTD3Q5T447 861 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PLAG1Q6DJT9 500 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ALG1LQ6GMV1 187 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FUT10Q6P4F1 479 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 RFLNAQ6ZTI6 216 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF367Q7RTV3 350 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MEX3DQ86XN8 651 aaKnown RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 RNF130Q86XS8 419 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 VRK3Q8IV63 474 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SLC34A3Q8N130 599 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 LMNTD1Q8N9Z9 388 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TRPV1Q8NER1 839 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FLCNQ8NFG4 579 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 GRPEL2Q8TAA5 225 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SETD6Q8TBK2 473 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 CREB3L4Q8TEY5 395 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 WBP2Q969T9 261 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TESCQ96BS2 214 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 DIRAS2Q96HU8 199 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SAMD11Q96NU1 681 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PSKH2Q96QS6 385 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FAM129BQ96TA1 746 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TM9SF2Q99805 663 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 NTMT1Q9BV86 223 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 C1QTNF6Q9BXI9 259 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SLC22A4Q9H015 551 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 C3orf14Q9HBI5 128 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ACER3Q9NUN7 267 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 IMPAD1Q9NX62 359 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ARL15Q9NXU5 204 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 IL17CQ9P0M4 197 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 CMAHPQ9Y471 501 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 A0A1B0GVC2 190 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SHISA3A0PJX4 238 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 C1orf226A1L170 272 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 A6NIN4 97 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 GABRR3A8MPY1 467 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FAM25AB3EWG3 89 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FAM25CB3EWG5 89 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FAM25GB3EWG6 89 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TRIM77I1YAP6 450 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FFAR1O14842 300 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SUV39H1O43463 412 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ACSL4O60488 711 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TPST2O60704 377 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 STK16O75716 305 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 EPN2O95208 641 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PRAMEF1O95521 474 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SCG5P05408 212 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 EBLN1P0CF75 366 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF30P17039 623 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ITGALP20701 1170 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PBLDP30039 288 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MLLT3P42568 568 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 RPS5P46782 204 aaKnown RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SOX9P48436 509 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PXNP49023 591 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 CLCN4P51793 760 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MVDP53602 400 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 YBEYP58557 167 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 UBE3AQ05086 875 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SCN1BQ07699 218 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MTAPQ13126 283 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MAD2L1Q13257 205 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 COL9A2Q14055 689 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 RGNQ15493 299 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 MICAQ29983 383 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PYDC2Q56P42 97 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TJAP1Q5JTD0 557 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SZRD1Q7Z422 152 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PDZD3Q86UT5 571 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 IFNL1Q8IU54 200 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PHC2Q8IXK0 858 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 GPR65Q8IYL9 337 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 IQCF1Q8N6M8 205 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ZFP41Q8N8Y5 198 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 OR4K1Q8NGD4 311 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 OR9Q1Q8NGQ5 310 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 PMEPA1Q969W9 287 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 SENP5Q96HI0 755 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-214ENST00000552783 UROC1Q96N76 676 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 TCF25Q9BQ70 676 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 DOHHQ9BU89 302 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 GON7Q9BXV9 100 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ATG10Q9H0Y0 220 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 FAM83DQ9H4H8 585 aa4.65□□□□□ -1.67
LIMA1-214ENST00000552783 ASIC5Q9NY37 505 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms