RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 DEPDC1Q5TB30 811 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 PRAMEF13Q5VWM6 474 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 GRHL2Q6ISB3 625 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 TRIM40Q6P9F5 258 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 SVOPQ8N4V2 548 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 PJA1Q8NG27 643 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 CEP295NLQ96MC4 621 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 CPEB1Q9BZB8 566 aaKnown RBP13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 MAGIXQ9H6Y5 334 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 FZD3Q9NPG1 666 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 DEC1Q9P2X7 70 aa13.08□□□□□ -0.32
PRPF40B-209ENST00000548825 PSMD11O00231 422 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 PTHP01270 115 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 CCDC159P0C7I6 412 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF30P17039 623 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 BUD31P41223 144 aaPredicted RBP13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 SOX9P48436 509 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 BCAP31P51572 246 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 CRYBA2P53672 197 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 HOXC5Q00444 222 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 MLLT1Q03111 559 aaPredicted RBP13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 FXNQ16595 210 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 ARMCX4Q5H9R4 360 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 OR8H2Q8N162 312 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 OR9A1PQ8NGU1 263 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 SMG7Q92540 1137 aaKnown RBP13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 FKBP10Q96AY3 582 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 LGR4Q9BXB1 951 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 ATAD3AQ9NVI7 634 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 GPATCH2Q9NW75 528 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 SLC23A2Q9UGH3 650 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 PCDHGA6Q9Y5G7 932 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 LYVE1Q9Y5Y7 322 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 IGLON5A6NGN9 336 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 OR52A4PA6NMU1 304 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 WWP2O00308 870 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 WBP4O75554 376 aaKnown RBP13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 C1GALT1C1LP0DN25 315 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 PCMT1P22061 227 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 LSM11P83369 360 aaKnown RBP eCLIP13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 PIN1Q13526 163 aaPredicted RBP13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 PRSS53Q2L4Q9 553 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 C17orf64Q86WR6 236 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 CXorf40AQ8TE69 158 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 SUSD6Q92537 303 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 RDH12Q96NR8 316 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 FERD3LQ96RJ6 166 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 TOR4AQ9NXH8 423 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 FBXW2Q9UKT8 454 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 CDH7Q9ULB5 785 aa13.07□□□□□ -0.32
PRPF40B-209ENST00000548825 TRIM64CA6NLI5 447 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 PSMA3P25788 255 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CD6P30203 668 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CNR2P34972 360 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TGM4P49221 684 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 RAB8AP61006 207 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SELENOWP63302 87 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 RELAQ04206 551 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TSTQ16762 297 aaKnown RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SPIN4Q56A73 249 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CLEC12AQ5QGZ9 265 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 DGLUCYQ7Z3D6 616 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TRIM73Q86UV7 250 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ARRDC3Q96B67 414 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 OR5M11Q96RB7 305 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CNPPD1Q9BV87 410 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 GULP1Q9UBP9 304 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ZNF282Q9UDV7 671 aaPredicted RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ERGIC3Q9Y282 383 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 THSD7BQ9C0I4 1608 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 FNDC1Q4ZHG4 1894 aaPredicted RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 AGAP14A8MT82 685 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 M0R3H8 397 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 KPNA4O00629 521 aaPredicted RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CBFA2T3O75081 653 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CNOT3O75175 753 aaKnown RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CH25HO95992 272 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 S100A5P33763 92 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 IFITM3Q01628 133 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 UBE3AQ05086 875 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SP140Q13342 867 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TUBA3CQ13748 450 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SHFQ7M4L6 423 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 FAM129CQ86XR2 697 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 OR8J2Q8NGG1 315 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 VWCEQ96DN2 955 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 ALPK1Q96QP1 1244 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 CENPOQ9BU64 300 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 DMRT3Q9NQL9 472 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SPATA6Q9NWH7 488 aaPredicted RBP13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TAS2R9Q9NYW1 312 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TVP23BQ9NYZ1 205 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 SEC14L3Q9UDX4 400 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 PRKAG2Q9UGJ0 569 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TBX21Q9UL17 535 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 TMCC3Q9ULS5 477 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 AP3M1Q9Y2T2 418 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 LAMA1P25391 3075 aa13.06□□□□□ -0.32
PRPF40B-209ENST00000548825 URB1O60287 2271 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms