RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ASPHQ12797 758 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 HERC3Q15034 1050 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 UNC50Q53HI1 259 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 TOR1AIP1Q5JTV8 583 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 AGAP7PQ5VUJ5 663 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 PRAMEF9Q5VWM5 478 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 LAS2Q8IYD9 372 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 ARHGEF39Q8N4T4 335 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 L3MBTL4Q8NA19 623 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 KCT2Q8NC54 265 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 ST6GALNAC3Q8NDV1 305 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 ARMC2Q8NEN0 867 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 TCP10LQ8TDR4 215 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 CREB3L4Q8TEY5 395 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.58□□□□□ -0.88
VPS28-204ENST00000526054 SREK1Q8WXA9 508 aaKnown RBP9.58□□□□□ -0.88
VPS28-204ENST00000526054 MMABQ96EY8 250 aaPredicted RBP9.58□□□□□ -0.88
VPS28-204ENST00000526054 VPS50Q96JG6 964 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 CNDP1Q96KN2 507 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 PKNOX2Q96KN3 472 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 NSUN5Q96P11 429 aaKnown RBP9.58□□□□□ -0.88
VPS28-204ENST00000526054 AGAP4Q96P64 663 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 FAM111AQ96PZ2 611 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 MACROD1Q9BQ69 325 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 NTMT1Q9BV86 223 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 SLC6A16Q9GZN6 736 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 RHBGQ9H310 441 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 EPS8L2Q9H6S3 715 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 SSU72Q9NP77 194 aaKnown RBP9.58□□□□□ -0.88
VPS28-204ENST00000526054 SEMA3GQ9NS98 782 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 PCDHGA11Q9Y5H2 935 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 ACTL7BQ9Y614 415 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 SLC22A7Q9Y694 548 aa9.58□□□□□ -0.88
VPS28-204ENST00000526054 A0A088AWK7 358 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 A0A0A6YYC8 382 aaPredicted RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 G3V2L1 256 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 H0YIG0 161 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 H0YIV9 168 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 I3L1I5 382 aaPredicted RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 OR7A17O14581 309 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 SASH3O75995 380 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 MED26O95402 600 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 ALOX12P18054 663 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 IL1RNP18510 177 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 ZNF10P21506 573 aaPredicted RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 TSFMP43897 325 aaKnown RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 OR1D4P47884 311 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 CDH13P55290 713 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 DNAJB13P59910 316 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 OCA2Q04671 838 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 TGM3Q08188 693 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 LCP2Q13094 533 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 TRAF3Q13114 568 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 DDX39BQ13838 428 aaKnown RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 DSG2Q14126 1118 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 ZNF169Q14929 603 aaPredicted RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 CPSF6Q16630 551 aaKnown RBP eCLIP9.57□□□□□ -0.88
VPS28-204ENST00000526054 GGTA1PQ4G0N0 100 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 TNFAIP8L3Q5GJ75 292 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 CRB2Q5IJ48 1285 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 CFAP157Q5JU67 520 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 C10orf62Q5T681 223 aaPredicted RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 LIPMQ5VYY2 423 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 TRIM40Q6P9F5 258 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 KIRREL2Q6UWL6 708 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 MILR1Q7Z6M3 343 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 EXOC3L1Q86VI1 746 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 PARP9Q8IXQ6 854 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 CCNYL1Q8N7R7 359 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 GOLGA6L1Q8N7Z2 621 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 OR7G3Q8NG95 312 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 OR52B6Q8NGF0 335 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 TRPC4APQ8TEL6 797 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 GAL3ST3Q96A11 431 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 MOCOSQ96EN8 888 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 THOC3Q96J01 351 aaKnown RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 ZNF382Q96SR6 550 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 BARD1Q99728 777 aaKnown RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 CRB3Q9BUF7 120 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 LHPPQ9H008 270 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 C12orf65Q9H3J6 166 aaKnown RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 ZBTB26Q9HCK0 441 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 OXSMQ9NWU1 459 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 ZNF282Q9UDV7 671 aaPredicted RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 TRPS1Q9UHF7 1281 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 ZNF490Q9ULM2 529 aaPredicted RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 MRPS2Q9Y399 296 aaKnown RBP9.57□□□□□ -0.88
VPS28-204ENST00000526054 TSC22D4Q9Y3Q8 395 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 MAU2Q9Y6X3 613 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 MYO9AB2RTY4 2548 aa9.57□□□□□ -0.88
VPS28-204ENST00000526054 CROCCQ5TZA2 2017 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 H3BQF6 201 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 TM9SF1O15321 606 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 FOXS1O43638 330 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 TYROBPO43914 113 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 TRIM13O60858 407 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 KLHL18O94889 574 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 ZNF888P0CJ79 500 aaPredicted RBP9.56□□□□□ -0.88
VPS28-204ENST00000526054 ACPPP15309 386 aa9.56□□□□□ -0.88
VPS28-204ENST00000526054 CREB1P16220 341 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms