RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SPATA24Q86W54 205 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 SYCP3Q8IZU3 236 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 EXOC6Q8TAG9 804 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 ATL1Q8WXF7 558 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 MOB3AQ96BX8 217 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 CNDP2Q96KP4 475 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 SPATA17Q96L03 361 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 MUS81Q96NY9 551 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 FOXN4Q96NZ1 517 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 LPAR4Q99677 370 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 HNRNPABQ99729 332 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 NKX3-1Q99801 234 aaPredicted RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 CPNE1Q99829 537 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 CCT7Q99832 543 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 SLC2A11Q9BYW1 496 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 FAM129AQ9BZQ8 928 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 NCOR1P1Q9H4R4 102 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 VPS37BQ9H9H4 285 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 XAB2Q9HCS7 855 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 CHST11Q9NPF2 352 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 INIPQ9NRY2 104 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 NKIRAS2Q9NYR9 191 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 NFKBIL1Q9UBC1 381 aaPredicted RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 C19orf25Q9UFG5 118 aaPredicted RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 HMGXB4Q9UGU5 601 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 IL17BQ9UHF5 180 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 PTBP2Q9UKA9 531 aaKnown RBP3.29□□□□□ -1.88
CD44-217ENST00000525348 MAN1B1Q9UKM7 699 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 FRMPD1Q5SYB0 1578 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 ERICH3Q5RHP9 1530 aa3.29□□□□□ -1.88
CD44-217ENST00000525348 NSD2O96028 1365 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 TTC21BQ7Z4L5 1316 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 PASKQ96RG2 1323 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 A0A1B0GVG6 124 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 A0A1W2PQ67 120 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ZSCAN5CA6NGD5 496 aaPredicted RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 CACNB4O00305 520 aaPredicted RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 CYTH3O43739 400 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 SLCO2B1O94956 709 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 BAG3O95817 575 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ATP1B1P05026 303 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 EPB41P11171 864 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 HPGDP15428 266 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 RPL35AP18077 110 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 HLA-FP30511 346 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 AXLP30530 894 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 HOXA6P31267 233 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ATP6V1E1P36543 226 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 EPS15P42566 896 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 NOVP48745 357 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CSRP3P50461 194 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 DNA2P51530 1060 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 EVCP57679 992 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 BEX3Q00994 111 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 IL1RL1Q01638 556 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 PAX8Q06710 450 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 KLC1Q07866 573 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 TRAP1Q12931 704 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 SNTB1Q13884 538 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 TMEM132DQ14C87 1099 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 SPCS2Q15005 226 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 STK11Q15831 433 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 LETM2Q2VYF4 491 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CES4AQ5XG92 561 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CNSTQ6PJW8 725 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CWC27Q6UX04 472 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 FRRS1Q6ZNA5 592 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 LPCAT2Q7L5N7 544 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ENOSF1Q7L5Y1 443 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 PLPPR4Q7Z2D5 763 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CENPVQ7Z7K6 275 aaPredicted RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 CCDC170Q8IYT3 715 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ZNF565Q8N9K5 539 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 AVL9Q8NBF6 648 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ZNF397Q8NF99 534 aaPredicted RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 RNF139Q8WU17 664 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 LZICQ8WZA0 190 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 PEX13Q92968 403 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 SGK3Q96BR1 496 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 SNF8Q96H20 258 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 C2orf48Q96LS8 159 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CATSPER2Q96P56 530 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 FEVQ99581 238 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 MAP3K3Q99759 626 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 SOSTQ9BQB4 213 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 PUS3Q9BZE2 481 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 EDEM3Q9BZQ6 932 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CCSER1Q9C0I3 900 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ZMYND12Q9H0C1 365 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 C8orf33Q9H7E9 229 aaPredicted RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 MED20Q9H944 212 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 LIN28AQ9H9Z2 209 aaKnown RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 CDH20Q9HBT6 801 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 CCDC177Q9NQR7 707 aaPredicted RBP3.28□□□□□ -1.88
CD44-217ENST00000525348 BATF3Q9NR55 127 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 SDHAF3Q9NRP4 125 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 FETUBQ9UGM5 382 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 TEKT2Q9UIF3 430 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 MUTYHQ9UIF7 546 aa3.28□□□□□ -1.88
CD44-217ENST00000525348 ATPIF1Q9UII2 106 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms