RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 XCR1P46094 333 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 RPS18P62269 152 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 RPS15P62841 145 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 OCA2Q04671 838 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 ACSM2AQ08AH3 577 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 SRSF6Q13247 344 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 DNASE1L3Q13609 305 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 ERV3-1Q14264 604 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 NCF4Q15080 339 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 VWA2Q5GFL6 755 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 CCNYL2Q5T2Q4 361 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 MFSD4BQ5TF39 518 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 VWA5B1Q5TIE3 1220 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 ACSM2BQ68CK6 577 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 NIPAL1Q6NVV3 410 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 ZNF517Q6ZMY9 492 aaPredicted RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 RGS9BPQ6ZS82 235 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 Q6ZSR9 355 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 OVCH1Q7RTY7 1134 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 PAGE2Q7Z2X7 111 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 TMEM151BQ8IW70 566 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 WDR75Q8IWA0 830 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 KIRREL3Q8IZU9 778 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 CA13Q8N1Q1 262 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 EFCAB3Q8N7B9 438 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 FAM47BQ8NA70 645 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 SNIP1Q8TAD8 396 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 PIWIL2Q8TC59 973 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 CHTF18Q8WVB6 975 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 ZCCHC14Q8WYQ9 949 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 KIAA1143Q96AT1 154 aaPredicted RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 THOC1Q96FV9 657 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 MAPKAP1Q9BPZ7 522 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 EBPLQ9BY08 206 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 SOX17Q9H6I2 414 aaPredicted RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 GPN2Q9H9Y4 310 aaPredicted RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 LRTM1Q9HBL6 345 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 PFDN4Q9NQP4 134 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 DKK4Q9UBT3 224 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 ZNF282Q9UDV7 671 aaPredicted RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 FBXW2Q9UKT8 454 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 RAXQ9Y2V3 346 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 PTRH2Q9Y3E5 179 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 CCL27Q9Y4X3 112 aa11.25□□□□□ -0.61
CUX1-210ENST00000497815 MRPS18BQ9Y676 258 aaKnown RBP11.25□□□□□ -0.61
CUX1-210ENST00000497815 SDK2Q58EX2 2172 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 AKAP13Q12802 2813 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 A0A0A6YYD5 115 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 GOLGA8QA0A0J9YX86 632 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 GNG14A0A1W2PPG7 69 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 GOLGA8OA6NCC3 632 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 GOLGA8NF8WBI6 632 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 PSMD12O00232 456 aaPredicted RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 HDAC3O15379 428 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 TMPRSS11DO60235 418 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 PCDH7O60245 1069 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 B4GALT2O60909 372 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 CDC123O75794 336 aaPredicted RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 RSL1D1O76021 490 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 SCELO95171 688 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 CAPNS1P04632 268 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 VIMP08670 466 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 FAM58BPP0C7Q3 252 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 RNH1P13489 461 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 LIFP15018 202 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 F8A1P23610 371 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 TPP2P29144 1249 aaPredicted RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 TSFMP43897 325 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 ARFIP1P53367 373 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 MAPK12P53778 367 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 LIM2P55344 173 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 RPL38P63173 70 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 NKG7Q16617 165 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 MINDY4Q4G0A6 757 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 ATP6AP1LQ52LC2 224 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 SPIN4Q56A73 249 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 XKR7Q5GH72 579 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 MRPL14Q6P1L8 145 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 RIPOR1Q6ZS17 1223 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 RNF165Q6ZSG1 346 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 ZC3H7AQ8IWR0 971 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 HOMEZQ8IX15 550 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 ZCCHC7Q8N3Z6 543 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 CDC26Q8NHZ8 85 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 STT3BQ8TCJ2 826 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 FKBP10Q96AY3 582 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 MIEF2Q96C03 454 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 TUBGCP3Q96CW5 907 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 NPLQ9BXD5 320 aaPredicted RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 ACTL8Q9H568 366 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 DDX31Q9H8H2 851 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 MKKSQ9NPJ1 570 aaPredicted RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 RIC8BQ9NVN3 520 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 C1orf109Q9NX04 203 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 IL17BQ9UHF5 180 aa11.24□□□□□ -0.61
CUX1-210ENST00000497815 FARSAQ9Y285 508 aaKnown RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 POLR3HQ9Y535 204 aaPredicted RBP11.24□□□□□ -0.61
CUX1-210ENST00000497815 WDFY3Q8IZQ1 3526 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 OR2W5A6NFC9 320 aa11.23□□□□□ -0.61
CUX1-210ENST00000497815 TRPC5OSA6NMA1 111 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms