RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 EXTL2Q9UBQ6 330 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 POLLQ9UGP5 575 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 LRRC72A6NJI9 287 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 DIRAS3O95661 229 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 SLC35F1Q5T1Q4 408 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 KIAA1161Q6NSJ0 714 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 DCP2Q8IU60 420 aaKnown RBP12.87□□□□□ -0.35
COL6A3-209ENST00000472056 OR1J4Q8NGS1 313 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 CNTNAP3BQ96NU0 1288 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 KLHL9Q9P2J3 617 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF175Q9Y473 711 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ATP6V1G2-DDX39BF2Z307 99 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 TOR1AO14656 332 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 TLX2O43763 284 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-209ENST00000472056 ZDHHC24Q6UX98 284 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 ZSCAN4Q8NAM6 433 aaPredicted RBP12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SIMC1Q8NDZ2 872 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 ANKRD60Q9BZ19 345 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 TRAV6A0A075B6T7 132 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 OR6C6A6NF89 314 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 A8MXE2 369 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 HCRTR2O43614 444 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SOCS5O75159 536 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 MEF2DQ14814 521 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SPHARQ15513 63 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 DECR1Q16698 335 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 UBE2J2Q8N2K1 259 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 BBS10Q8TAM1 723 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 BORCS8Q96FH0 119 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 RNASEH2AO75792 299 aaKnown RBP12.86□□□□□ -0.35
COL6A3-209ENST00000472056 RETP07949 1114 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SLC6A9P48067 706 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 NFATC3Q12968 1075 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SLC36A3Q495N2 470 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 TMEM234Q8WY98 164 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 MKRN2Q9H000 416 aaKnown RBP12.86□□□□□ -0.35
COL6A3-209ENST00000472056 KCNH6Q9H252 994 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 HIF3AQ9Y2N7 669 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 TJP1Q07157 1748 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 J3QRK9 145 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 CSF1P09603 554 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 HLA-EP13747 358 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 KEAP1Q14145 624 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 PDSS1Q5T2R2 415 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 ZER1Q7Z7L7 766 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 ADAMTS19Q8TE59 1207 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 DEDD2Q8WXF8 326 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 FBXL8Q96CD0 374 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 MTERF1Q99551 399 aaKnown RBP12.86□□□□□ -0.35
COL6A3-209ENST00000472056 GNG13Q9P2W3 67 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 GRHPRQ9UBQ7 328 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 WDR45BQ5MNZ6 344 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 LCN8Q6JVE9 175 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF598Q86UK7 904 aaKnown RBP12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SNX29P2Q8IUI4 249 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SMARCD2Q92925 531 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 CMKLR1Q99788 373 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 UNC13CQ8NB66 2214 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 EFCAB7A8K855 629 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SMIM10L2AP0DMW4 78 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SMIM10L2BP0DMW5 78 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 RAB4AP20338 218 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 DEFA6Q01524 100 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 PEA15Q15121 130 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 ATAD3CQ5T2N8 411 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SPARTQ8N0X7 666 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 BTBD2Q9BX70 525 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 DTLQ9NZJ0 730 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 APODP05090 189 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 PTPRRQ15256 657 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 SF3A2Q15428 464 aaKnown RBP12.86□□□□□ -0.35
COL6A3-209ENST00000472056 UBXN11Q5T124 520 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 COMMD7Q86VX2 200 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 UQCC2Q9BRT2 126 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 TTYH2Q9BSA4 534 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 EBPLQ9BY08 206 aa12.86□□□□□ -0.35
COL6A3-209ENST00000472056 MMP20O60882 483 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 UBBP0CG47 229 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 UBCP0CG48 685 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 IFNGR1P15260 489 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 HOXD12P35452 270 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 CASRP41180 1078 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 RPS27AP62979 156 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 UBA52P62987 128 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 XKR5Q6UX68 686 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 SLC29A4Q7RTT9 530 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 SSX3Q99909 188 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 A8MT66 165 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 F8W036 122 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 HSD17B1P14061 328 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 ART1P52961 327 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 CCINQ13939 588 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 ELOAQ14241 798 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 C4orf32Q8N8J7 132 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 EBF4Q9BQW3 602 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 Q9N2J8 555 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 DOCK8Q8NF50 2099 aa12.85□□□□□ -0.35
COL6A3-209ENST00000472056 MTCL1Q9Y4B5 1905 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 DICER1Q9UPY3 1922 aaKnown RBP12.85□□□□□ -0.35
COL6A3-209ENST00000472056 JRKO75564 520 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms