RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 CDRT1O95170 752 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 C9P02748 559 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 C1SP09871 688 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 CYP2A7P20853 494 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 TUBA3CQ13748 450 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 HYAL4Q2M3T9 481 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 MPPE1Q53F39 396 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 ATG9BQ674R7 924 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 FAM131AQ6UXB0 335 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 GAREM2Q75VX8 874 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SPRED2Q7Z698 418 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 LHFPL3Q86UP9 236 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 OR7G3Q8NG95 312 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SLC35B4Q969S0 331 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 C1GALT1C1Q96EU7 318 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 FERD3LQ96RJ6 166 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 TBC1D17Q9HA65 648 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 ZNF226Q9NYT6 803 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 IFT52Q9Y366 437 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 A0A1W2PS29 197 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SYN3O14994 580 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 CPNE3O75131 537 aaKnown RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 IL3P08700 152 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 ATP1B2P14415 290 aaPredicted RBP8.29□□□□□ -1.08
USP40-203ENST00000427112 CLCN4P51793 760 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 PPP5CP53041 499 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 KCNJ10P78508 379 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 RING1Q06587 406 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 TARDBPQ13148 414 aaKnown RBP eCLIP8.29□□□□□ -1.08
USP40-203ENST00000427112 BAK1Q16611 211 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SVOPQ8N4V2 548 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 PJA1Q8NG27 643 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 TSPEARQ8WU66 669 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 ZFPM2Q8WW38 1151 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 ASZ1Q8WWH4 475 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 SOCS4Q8WXH5 440 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 COL26A1Q96A83 441 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 F2RL3Q96RI0 385 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 DUSP21Q9H596 190 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 TMEM39AQ9NV64 488 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 RPS6KA6Q9UK32 745 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 NTNG1Q9Y2I2 539 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 PCDHGB6Q9Y5F9 930 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 LYVE1Q9Y5Y7 322 aa8.29□□□□□ -1.08
USP40-203ENST00000427112 TANC1Q9C0D5 1861 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 TRIM64A6NGJ6 449 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 AGAP5A6NIR3 686 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 FADS2P1A8MWK0 482 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 ARHGAP33O14559 1287 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 DVL2O14641 736 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 WNT9AO14904 365 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 TMCC2O75069 709 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 GCM2O75603 506 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 GPX5O75715 221 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 MED26O95402 600 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 RPS19P39019 145 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 GZMMP51124 257 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 C10orf62Q5T681 223 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 PPP2R2DQ66LE6 453 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 IL20RBQ6UXL0 311 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 CERS6Q6ZMG9 384 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 VASH1Q7L8A9 365 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 LRRTM4Q86VH4 590 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 NPAS3Q8IXF0 933 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 AMER2Q8N7J2 671 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 GATAD2BQ8WXI9 593 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 MRPS31Q92665 395 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 SIPA1Q96FS4 1042 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 BTBD2Q9BX70 525 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 KLF16Q9BXK1 252 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 ASPNQ9BXN1 380 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 POLR2J2Q9GZM3 115 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 FAM83DQ9H4H8 585 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 GPATCH2Q9NW75 528 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 ZDHHC3Q9NYG2 299 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 WDFY3Q8IZQ1 3526 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 KMOO15229 486 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 HRO43593 1189 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 PSIP1O75475 530 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 RPLP0P05388 317 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 RETP07949 1114 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 HOXC8P31273 242 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 ATP6V1E1P36543 226 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 BMPR1AP36894 532 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 CD79BP40259 229 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 BUD31P41223 144 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 TOP3AQ13472 1001 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 TRIM71Q2Q1W2 868 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 PYDC2Q56P42 97 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 DDI2Q5TDH0 399 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 USP45Q70EL2 814 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 TSEN54Q7Z6J9 526 aaKnown RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 SCAIQ8N9R8 606 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 ZNF784Q8NCA9 323 aaPredicted RBP8.28□□□□□ -1.08
USP40-203ENST00000427112 C11orf65Q8NCR3 313 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 ADAMTS19Q8TE59 1207 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 PPCDCQ96CD2 204 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 COQ8BQ96D53 544 aa8.28□□□□□ -1.08
USP40-203ENST00000427112 YTHDF1Q9BYJ9 559 aaKnown RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms