RNA–Protein interactions for RNA: ENST00000398587.6

PCDHGA11-201, Transcript of protocadherin gamma subfamily A, 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA11, Length 4,647 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11-201ENST00000398587 ZNF3P17036 446 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 BMP8BP34820 402 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 FOXA1P55317 472 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 MGAT3Q09327 533 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 TLR1Q15399 786 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 COLEC12Q5KU26 742 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 BMP8AQ7Z5Y6 402 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 CARM1Q86X55 608 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 TEX26Q8N6G2 289 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 LMX1AQ8TE12 382 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 NCSTNQ92542 709 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 MYRFLQ96LU7 910 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 CD180Q99467 661 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 FBRSQ9HAH7 460 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 WBP4O75554 376 aaKnown RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 RENP00797 406 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 CD2P06729 351 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 GGT1P19440 569 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 CLCN2P51788 898 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 PON2Q15165 354 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 HNRNPA1L2Q32P51 320 aaKnown RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 C6orf141Q5SZD1 244 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 PRPF38BQ5VTL8 546 aaKnown RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 NIPAL1Q6NVV3 410 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 LARP4Q71RC2 724 aaKnown RBP eCLIP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 C12orf43Q96C57 262 aaKnown RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 TMCO6Q96DC7 493 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 KCTD7Q96MP8 289 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 MCHR1Q99705 422 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 COMMD9Q9P000 198 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 C1orf226A1L170 272 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 A8MUA0 341 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 SCAMP2O15127 329 aaKnown RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 TLX3O43711 291 aaPredicted RBP13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 SOX14O95416 240 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 CA3P07451 260 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 MS4A2Q01362 244 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 HPS1Q92902 700 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 FATE1Q969F0 183 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 NECTIN4Q96NY8 510 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 RTP3Q9BQQ7 232 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 COMMD4Q9H0A8 199 aa13.67□□□□□ -0.22
PCDHGA11-201ENST00000398587 DENRO43583 198 aaKnown RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 NUAK1O60285 661 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 PSIP1O75475 530 aaKnown RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 SERPINA3P01011 423 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 ZNF823P16415 610 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 SLAMF1Q13291 335 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 RCAN2Q14206 197 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 DECR1Q16698 335 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 ATCAYQ86WG3 371 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 ZNF420Q8TAQ5 688 aaPredicted RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 RNF31Q96EP0 1072 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 KCNS3Q9BQ31 491 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 SLC17A9Q9BYT1 436 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 EHD1Q9H4M9 534 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 RPRD1BQ9NQG5 326 aaKnown RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 TRNAU1APQ9NX07 287 aaKnown RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 RHCGQ9UBD6 479 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 ZNF222Q9UK12 451 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 FABP12A6NFH5 140 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 MROH6A6NGR9 719 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 TBX1O43435 398 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 BMP2P12643 396 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 DHPSP49366 369 aaPredicted RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 GBX2P52951 348 aaPredicted RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 CDH11P55287 796 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 TUBA1BP68363 451 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 TUBA1AQ71U36 451 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 MARCH5Q9NX47 278 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 GDE1Q9NZC3 331 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 TMEM5Q9Y2B1 443 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 IFT52Q9Y366 437 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 GPC6Q9Y625 555 aaPredicted RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 KIAA1551Q9HCM1 1747 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 MARF1Q9Y4F3 1742 aaKnown RBP13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 CPED1A4D0V7 1026 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 E7EQ34 232 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 CCNKO75909 580 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 FHP07954 510 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 GPX3P22352 226 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 CXCR1P25024 350 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 ITGB7P26010 798 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 FAM214AQ32MH5 1076 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 DPPA4Q7L190 304 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 COMMD6Q7Z4G1 85 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 C6orf120Q7Z4R8 191 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 KRT77Q7Z794 578 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 AMIGO1Q86WK6 493 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 OR7G3Q8NG95 312 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 FAM129BQ96TA1 746 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 PRRG4Q9BZD6 226 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 NKIRAS2Q9NYR9 191 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 LHX3Q9UBR4 397 aa13.66□□□□□ -0.22
PCDHGA11-201ENST00000398587 SCDO00767 359 aa13.65□□□□□ -0.22
PCDHGA11-201ENST00000398587 EMC8O43402 210 aa13.65□□□□□ -0.22
PCDHGA11-201ENST00000398587 ITGBL1O95965 494 aaPredicted RBP13.65□□□□□ -0.22
PCDHGA11-201ENST00000398587 OR12D1P0DN82 309 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms