RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 IL11RAQ14626 422 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ZC3H12BQ5HYM0 836 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 PAGE2BQ5JRK9 111 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ATP1A1-AS1Q5TC04 95 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 OR4C11Q6IEV9 310 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 MRM1Q6IN84 353 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 RHBDD2Q6NTF9 364 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 NOXRED1Q6NXP6 359 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 DTX1Q86Y01 620 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TMEM126BQ8IUX1 230 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 METTL4Q8N3J2 472 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 RAB3IL1Q8TBN0 382 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 RERGQ96A58 199 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 TM4SF18Q96CE8 201 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TUBGCP3Q96CW5 907 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CHMP6Q96FZ7 201 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 DEPDC7Q96QD5 511 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CCT8L2Q96SF2 557 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 DPYSL5Q9BPU6 564 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ACTR5Q9H9F9 607 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 POLR1BQ9H9Y6 1135 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 EML4Q9HC35 981 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 SERTAD3Q9UJW9 196 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 FBXW2Q9UKT8 454 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 RARRES3Q9UL19 164 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SNX6Q9UNH7 406 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 C1QTNF9BB2RNN3 333 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 B4E171 279 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 NPIPB8E9PQR5 432 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 HRKO00198 91 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TERTO14746 1132 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 CHST10O43529 356 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 LDB3O75112 727 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CCNDBP1O95273 360 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 RECKO95980 971 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 KRT6AP02538 564 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 KRT6BP04259 564 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 C1QTNF9P0C862 333 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SDC1P18827 310 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SDHBP21912 280 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 HRH2P25021 359 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SERPINB5P36952 375 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TSPAN7P41732 249 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 KRT6CP48668 564 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 UFM1P61960 85 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 RPL38P63173 70 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 CUL3Q13618 768 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 NR6A1Q15406 480 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 HIST2H2ACQ16777 129 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 ZNF385BQ569K4 471 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TMTC4Q5T4D3 741 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TMEM164Q5U3C3 297 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 IL23RQ5VWK5 629 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 HIST2H2AA3Q6FI13 130 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 PIGWQ7Z7B1 504 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CRLF3Q8IUI8 442 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 FUNDC1Q8IVP5 155 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 GPR135Q8IZ08 494 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CARFQ8N187 725 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ARFGAP2Q8N6H7 521 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 FAM47BQ8NA70 645 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TRPV3Q8NET8 790 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 WDR36Q8NI36 951 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 C10orf82Q8WW14 230 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CMTM7Q96FZ5 175 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 PEX11GQ96HA9 241 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TSSK3Q96PN8 268 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TMEM120AQ9BXJ8 343 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SLC29A3Q9BZD2 475 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 STRADBQ9C0K7 418 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 DDX31Q9H8H2 851 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 SLAMF7Q9NQ25 335 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 PPT2Q9UMR5 302 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 EPB41L3Q9Y2J2 1087 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 TSC22D4Q9Y3Q8 395 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SLC22A7Q9Y694 548 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 FLNCQ14315 2725 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SERTM1A2A2V5 107 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 PROM1O43490 865 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 AKAP10O43572 662 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SNX3O60493 162 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 DLGAP3O95886 979 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 UMODP07911 640 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ADRB1P08588 477 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 SLC35G6P0C7Q6 338 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 C8orf89P0DMQ9 161 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 MAOAP21397 527 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CXCR2P25025 360 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 TAS2R50P59544 299 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 ACY1Q03154 408 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 LAPTM5Q13571 262 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 UBAP2LQ14157 1087 aaKnown RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 CLPPQ16740 277 aaPredicted RBP3.8□□□□□ -1.8
LIG4-201ENST00000356922 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.8□□□□□ -1.8
LIG4-201ENST00000356922 DCAF12Q5T6F0 453 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 MLIPQ5VWP3 458 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 PAOXQ6QHF9 649 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 VASH2Q86V25 355 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 DSELQ8IZU8 1212 aa3.8□□□□□ -1.8
LIG4-201ENST00000356922 CA13Q8N1Q1 262 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms