RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 KCNC2Q96PR1 638 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 MIR1-1HGQ9H1L0 117 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 RHBGQ9H310 441 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 CACNA1IQ9P0X4 2223 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 ARHGEF17Q96PE2 2063 aaPredicted RBP13.29□□□□□ -0.28
TRIM4-201ENST00000349062 LCMT2O60294 686 aaKnown RBP13.29□□□□□ -0.28
TRIM4-201ENST00000349062 FABP3P05413 133 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 KELP23276 732 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 RCVRNP35243 200 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 SSR2P43308 183 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 CDH12P55289 794 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 PPP2CBP62714 309 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 PPP2CAP67775 309 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 DMPKQ09013 629 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 HYAL1Q12794 435 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 ANKRD54Q6NXT1 300 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 DCUN1D3Q8IWE4 304 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 ZZZ3Q8IYH5 903 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 PSD4Q8NDX1 1056 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 TESCQ96BS2 214 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 REPS1Q96D71 796 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 DUS3LQ96G46 650 aaKnown RBP13.29□□□□□ -0.28
TRIM4-201ENST00000349062 EFCAB11Q9BUY7 163 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 OR52A5Q9H2C5 316 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 REEP4Q9H6H4 257 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 REEP1Q9H902 201 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 FAM118AQ9NWS6 357 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 ZFR2Q9UPR6 939 aaKnown RBP13.29□□□□□ -0.28
TRIM4-201ENST00000349062 PCDHB11Q9Y5F2 797 aa13.29□□□□□ -0.28
TRIM4-201ENST00000349062 TSPAN11A1L157 253 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 C5orf67F2Z3F1 127 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 FAM227AF5H4B4 570 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 M0R3G1 203 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 RASGRP1O95267 797 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 OXSR1O95747 527 aaPredicted RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 C9P02748 559 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 RRM2P31350 389 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 NEK10Q6ZWH5 1172 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 GALNT13Q8IUC8 556 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 ALDH16A1Q8IZ83 802 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 FAM9CQ8IZT9 166 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 KRT78Q8N1N4 520 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 ANKRD53Q8N9V6 530 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 HMGB4Q8WW32 186 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 HTRA1Q92743 480 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 GTPBP3Q969Y2 492 aaKnown RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 TRIT1Q9H3H1 467 aaKnown RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 GORASP2Q9H8Y8 452 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 ITM2CQ9NQX7 267 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 PHPT1Q9NRX4 125 aaPredicted RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 GDE1Q9NZC3 331 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 SNX5Q9Y5X3 404 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 GPC6Q9Y625 555 aaPredicted RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 ASGR2P07307 311 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 LAMP2P13473 410 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 RAPSNQ13702 412 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 RGNQ15493 299 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 SPIN4Q56A73 249 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 OR2T5Q6IEZ7 315 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 PTOV1Q86YD1 416 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 SFTPA2Q8IWL1 248 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 NLGN4XQ8N0W4 816 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 OR2T29Q8NH02 315 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 CHTF18Q8WVB6 975 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 XAGE5Q8WWM1 108 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 ATAD3AQ9NVI7 634 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 TEX10Q9NXF1 929 aaPredicted RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 SAMD4AQ9UPU9 718 aaKnown RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 EXO1Q9UQ84 846 aaKnown RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 LRRK1Q38SD2 2015 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 FAM220BPB1ANY3 271 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 H0YJX3 145 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 KPNA4O00629 521 aaPredicted RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 RNGTTO60942 597 aaKnown RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 CCNDBP1O95273 360 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 ACADMP11310 421 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 ASMTP46597 345 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 TPTEP56180 551 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 SPIBQ01892 262 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 CD47Q08722 323 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 KCNC3Q14003 757 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 CLCA4Q14CN2 919 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 CCDC85BQ15834 202 aaPredicted RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 CDKL4Q5MAI5 379 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 BROXQ5VW32 411 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 SLCO6A1Q86UG4 719 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 PDZD3Q86UT5 571 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 NLRP8Q86W28 1048 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 MEX3DQ86XN8 651 aaKnown RBP13.28□□□□□ -0.28
TRIM4-201ENST00000349062 MFSD2AQ8NA29 543 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 SLC17A9Q9BYT1 436 aa13.28□□□□□ -0.28
TRIM4-201ENST00000349062 TRBV5-3A0A0A0MS03 114 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 LOC100130705A0A1B0GUX0 176 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 C5orf58C9J3I9 102 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 PSMD11O00231 422 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 BCKDKO14874 412 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 SCN2BO60939 215 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 CNOT3O75175 753 aaKnown RBP13.27□□□□□ -0.28
TRIM4-201ENST00000349062 SNRNP200O75643 2136 aaKnown RBP13.27□□□□□ -0.28
TRIM4-201ENST00000349062 CLPXO76031 633 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms