RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 CR2P20023 1033 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SDC2P34741 201 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 FEN1P39748 380 aaKnown RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 LIMS1P48059 325 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ALDH9A1P49189 494 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CTAG1AP78358 180 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ABRQ12979 859 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ZNF267Q14586 743 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 POU4F3Q15319 338 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SF1Q15637 639 aaKnown RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 ZNF792Q3KQV3 632 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 LEXMQ3ZCV2 418 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PRAMEF9Q5VWM5 478 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 NOXRED1Q6NXP6 359 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ANKRD54Q6NXT1 300 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ZNF782Q6ZMW2 699 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 PDZD3Q86UT5 571 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 OR8H3Q8N146 312 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 NAGSQ8N159 534 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CFAP52Q8N1V2 620 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 Q8N402 240 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 NANOGP1Q8N7R0 232 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 GALNT11Q8NCW6 608 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 OR6J1Q8NGC5 347 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 LHFPL5Q8TAF8 219 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CMTM7Q96FZ5 175 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 MSANTD3Q96H12 275 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 HYLS1Q96M11 299 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PSKH2Q96QS6 385 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 POLR2J2Q9GZM3 115 aaKnown RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 CRISPLD1Q9H336 500 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PAK6Q9NQU5 681 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 ACER3Q9NUN7 267 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 UCKL1Q9NWZ5 548 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 TMCC3Q9ULS5 477 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SSR3Q9UNL2 185 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PCDHB11Q9Y5F2 797 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 FAM240BA0A1B0GVZ2 78 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 C1orf226A1L170 272 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ARL5CA6NH57 179 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 A8MX80 341 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ATP6V1G2-DDX39BF2Z307 99 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 H7C0S8 307 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 BTN3A3O00478 584 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 INSIG1O15503 277 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 HCN1O60741 890 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SLC43A1O75387 559 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 RFPL3O75679 317 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 STK16O75716 305 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ALDH1A1P00352 501 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 GASTP01350 101 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 DDCP20711 480 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PRPH2P23942 346 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 POU1F1P28069 291 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PCGF2P35227 344 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 TALDO1P37837 337 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CPT1AP50416 773 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CRISP1P54107 249 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 YBEYP58557 167 aaPredicted RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 IKZF1Q13422 519 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ARHGEF7Q14155 803 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 GANABQ14697 944 aaKnown RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 RGNQ15493 299 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 PTRHD1Q6GMV3 140 aaKnown RBP6.51□□□□□ -1.37
VPS39-202ENST00000348544 FRMPD2BQ6IN97 320 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CNIH2Q6PI25 160 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 MIB1Q86YT6 1006 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SCN4BQ8IWT1 228 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ZNF366Q8N895 744 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 AQP11Q8NBQ7 271 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SLC37A3Q8NCC5 494 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 OR11H4Q8NGC9 324 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SAMD11Q96NU1 681 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 KATNB1Q9BVA0 655 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 KCNN2Q9H2S1 579 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SPNS1Q9H2V7 528 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 MROH8Q9H579 483 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ELOVL6Q9H5J4 265 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ELP3Q9H9T3 547 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 ZFP64Q9NPA5 681 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 GPATCH2Q9NW75 528 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 SCML1Q9UN30 329 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 KCNE2Q9Y6J6 123 aa6.51□□□□□ -1.37
VPS39-202ENST00000348544 CHD5Q8TDI0 1954 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 A8MVJ9 347 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 ANKRD66B4E2M5 251 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 QSOX1O00391 747 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 GAPDHSO14556 408 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 SLC9A3R1O14745 358 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 CHP2O43745 196 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 AKAP8O43823 692 aaKnown RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 SLC25A14O95258 325 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 F11P03951 625 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 COX7A2P14406 83 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 PRPS1L1P21108 318 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 MLLT11Q13015 90 aaPredicted RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 MRPL28Q13084 256 aaKnown RBP6.5□□□□□ -1.37
VPS39-202ENST00000348544 FCN2Q15485 313 aa6.5□□□□□ -1.37
VPS39-202ENST00000348544 AANATQ16613 207 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms