RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 STRA6Q9BX79 667 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 ZNF350Q9GZX5 532 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 ARL6Q9H0F7 186 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 RBPJLQ9UBG7 517 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 UTS2RQ9UKP6 389 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 LOC105369274A0A096LPK9 316 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 IRGMA1A4Y4 181 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 OR6C74A6NCV1 312 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 CD2P06729 351 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 SLC35G6P0C7Q6 338 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 BCKDHAP12694 445 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 FSHRP23945 695 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 KDELR2P33947 212 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 IGFALSP35858 605 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 HLCSP50747 726 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 TMBIM6P55061 237 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 ADAM15Q13444 863 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 LRRC32Q14392 662 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 XKR4Q5GH76 650 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 FAM46CQ5VWP2 391 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 ELP2Q6IA86 826 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 C1orf94Q6P1W5 598 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 TTLL10Q6ZVT0 673 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 OR4N4Q8N0Y3 316 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 TIFAQ96CG3 184 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 CPNE2Q96FN4 548 aaPredicted RBP8.39□□□□□ -1.07
RTN3-202ENST00000339997 MMP27Q9H306 513 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 KCNK12Q9HB15 430 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 PHPT1Q9NRX4 125 aaPredicted RBP8.39□□□□□ -1.07
RTN3-202ENST00000339997 FARSBQ9NSD9 589 aaKnown RBP8.39□□□□□ -1.07
RTN3-202ENST00000339997 SLC39A1Q9NY26 324 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 TMEM9Q9P0T7 183 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 MRPS33Q9Y291 106 aaKnown RBP8.39□□□□□ -1.07
RTN3-202ENST00000339997 HCN4Q9Y3Q4 1203 aa8.39□□□□□ -1.07
RTN3-202ENST00000339997 LCHNA4D1U4 455 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 SLC38A8A6NNN8 435 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 H7C2Y5 167 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 REM1O75628 298 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 HLA-EP13747 358 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 LCN1P31025 176 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 MAP3K8P41279 467 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 GALNT2Q10471 571 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 FAPQ12884 760 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 NPRL3Q12980 569 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 MBTPS1Q14703 1052 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 OR4D1Q15615 310 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 TECRLQ5HYJ1 363 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 GTF2IRD2BQ6EKJ0 949 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 GTF2IRD2Q86UP8 949 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 NPAS3Q8IXF0 933 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 CD300LFQ8TDQ1 290 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 HMGB4Q8WW32 186 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 ADAD1Q96M93 576 aaKnown RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 COMMD4Q9H0A8 199 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 SUV39H2Q9H5I1 410 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 ALG5Q9Y673 324 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 MKI67P46013 3256 aaKnown RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 F5P12259 2224 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 A0A096LPI6 279 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 HTR3EA5X5Y0 456 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 TLL1O43897 1013 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 RASAL1O95294 804 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 TFAP2AP05549 437 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 SRPRAP08240 638 aaKnown RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 C21orf33P30042 268 aaPredicted RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 PPM1AP35813 382 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 ACTR1BP42025 376 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 GBX2P52951 348 aaPredicted RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 ACTR1AP61163 376 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 TUBA1BP68363 451 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 NKX3-2P78367 333 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 EMX2Q04743 252 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 ATP6AP1Q15904 470 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 MS4A13Q5J8X5 152 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 TUBA1AQ71U36 451 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 AMZ2Q86W34 360 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 GALNT13Q8IUC8 556 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 YIPF7Q8N8F6 280 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 C2CD4AQ8NCU7 369 aaPredicted RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 BEST4Q8NFU0 473 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 OR5T3Q8NGG3 340 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 ZNF420Q8TAQ5 688 aaPredicted RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 NTAN1Q96AB6 310 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 NECTIN4Q96NY8 510 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 HAPLN3Q96S86 360 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 P2RY13Q9BPV8 354 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 OR51E2Q9H255 320 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 VNN3Q9NY84 501 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 SH2B3Q9UQQ2 575 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 SCN11AQ9UI33 1791 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 METTL21EPA6NDL7 271 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 K7ERQ8 282 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 SLC9A3R1O14745 358 aaPredicted RBP8.38□□□□□ -1.07
RTN3-202ENST00000339997 PI15O43692 258 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 OR7A10O76100 309 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 C8GP07360 202 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 ETFAP13804 333 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 KELP23276 732 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 S100A2P29034 98 aa8.38□□□□□ -1.07
RTN3-202ENST00000339997 SLC6A9P48067 706 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms