RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 MALT1Q9UDY8 824 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 KCNN3Q9UGI6 736 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 DNMT3LQ9UJW3 386 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 CLCA3PQ9Y6N3 262 aa13.18□□□□□ -0.3
SYNE3-201ENST00000334258 TNFRSF21O75509 655 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 CTRB1P17538 263 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 HNRNPA0Q13151 305 aaKnown RBP13.17□□□□□ -0.3
SYNE3-201ENST00000334258 CHIT1Q13231 466 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 NFATC2Q13469 925 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 TAF12Q16514 161 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 TCTN1Q2MV58 587 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 CTXN3Q4LDR2 81 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 CTRB2Q6GPI1 263 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 SYNPOQ8N3V7 929 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 C19orf18Q8NEA5 215 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 GFM1Q96RP9 751 aaKnown RBP13.17□□□□□ -0.3
SYNE3-201ENST00000334258 CRISPLD1Q9H336 500 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 FAM83DQ9H4H8 585 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 ZFYVE1Q9HBF4 777 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 FAM120CQ9NX05 1096 aaKnown RBP13.17□□□□□ -0.3
SYNE3-201ENST00000334258 YY2O15391 372 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 EPORP19235 508 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 CRYBA2P53672 197 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 CDH4P55283 916 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 IRF8Q02556 426 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 UBE3AQ05086 875 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 RGNQ15493 299 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 GPRC6AQ5T6X5 926 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 ARMC12Q5T9G4 340 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 FAM109AQ8N4B1 249 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 PCDHB8Q9UN66 801 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 FCF1Q9Y324 198 aaKnown RBP13.17□□□□□ -0.3
SYNE3-201ENST00000334258 DOCK4Q8N1I0 1966 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 A0A0G2JMP0 313 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 A0A0X1KG70 313 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 ZNF780AO75290 641 aaPredicted RBP13.17□□□□□ -0.3
SYNE3-201ENST00000334258 ENTPD6O75354 484 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 OR2B3O76000 313 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 GADD45GO95257 159 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 ETFAP13804 333 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 NAGAP17050 411 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 GABRB1P18505 474 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 UQCRC1P31930 480 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 WNT3P56703 355 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 NKX3-2P78367 333 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 EFR3AQ14156 821 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 TATDN3Q17R31 274 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 C5orf22Q49AR2 442 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 IGSF11Q5DX21 431 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 SDE2Q6IQ49 451 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 GLB1LQ6UWU2 654 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 MAMSTRQ6ZN01 415 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 AMIGO1Q86WK6 493 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 MTERF3Q96E29 417 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 FAM193BQ96PV7 902 aaPredicted RBP13.17□□□□□ -0.3
SYNE3-201ENST00000334258 IL26Q9NPH9 171 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 SEC14L4Q9UDX3 406 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 HCN4Q9Y3Q4 1203 aa13.17□□□□□ -0.3
SYNE3-201ENST00000334258 TRAV19A0A0A6YYK7 116 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 H3BN98 237 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 SCO1O75880 301 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 PDE9AO76083 593 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 SOX14O95416 240 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 IRF1P10914 325 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 INPP1P49441 399 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 LIMK1P53667 647 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 MTAPQ13126 283 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 C1DQ13901 141 aaKnown RBP13.16□□□□□ -0.3
SYNE3-201ENST00000334258 DOC2BQ14184 412 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 LARS2Q15031 903 aaKnown RBP13.16□□□□□ -0.3
SYNE3-201ENST00000334258 CHRNA6Q15825 494 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 TRIM71Q2Q1W2 868 aaKnown RBP13.16□□□□□ -0.3
SYNE3-201ENST00000334258 TRIQKQ629K1 86 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 MSANTD1Q6ZTZ1 278 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 TSEN54Q7Z6J9 526 aaKnown RBP13.16□□□□□ -0.3
SYNE3-201ENST00000334258 GPR156Q8NFN8 814 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 TRIM45Q9H8W5 580 aaPredicted RBP13.16□□□□□ -0.3
SYNE3-201ENST00000334258 TMEM39AQ9NV64 488 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 ANKRD36A6QL64 1941 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 GNG14A0A1W2PPG7 69 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 MGAT4DA6NG13 374 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 SMLR1H3BR10 107 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 SCN2BO60939 215 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 ARHGEF15O94989 841 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 SCG5P05408 212 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 CSF3P09919 207 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 CLEC2LP0C7M8 214 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 KIR2DL3P43628 341 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 RAB25P57735 213 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 ASAH1Q13510 395 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 TEAD4Q15561 434 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 HKDC1Q2TB90 917 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 OR4A15Q8NGL6 344 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 ZFAND1Q8TCF1 268 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 UBTD2Q8WUN7 234 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 TRMT61AQ96FX7 289 aaKnown RBP13.16□□□□□ -0.3
SYNE3-201ENST00000334258 FUBP3Q96I24 572 aaKnown RBP eCLIP13.16□□□□□ -0.3
SYNE3-201ENST00000334258 ING3Q9NXR8 418 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 MAT2BQ9NZL9 334 aa13.16□□□□□ -0.3
SYNE3-201ENST00000334258 MAPRE3Q9UPY8 281 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms