RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 HTR2BP41595 481 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 CSNK1DP48730 415 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 DAB2P98082 770 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 MADCAM1Q13477 382 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SCARB2Q14108 478 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 WDR45BQ5MNZ6 344 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 FAM217AQ8IXS0 508 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 UBE2J2Q8N2K1 259 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SETD6Q8TBK2 473 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 ADAMTS19Q8TE59 1207 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 ASB15Q8WXK1 588 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 ARHGAP39Q9C0H5 1083 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 SGK2Q9HBY8 427 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 EXOSC4Q9NPD3 245 aaKnown RBP12.88□□□□□ -0.35
SKA3-202ENST00000314759 DYRK4Q9NR20 520 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 CD84Q9UIB8 345 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 PCDHGB2Q9Y5G2 931 aa12.88□□□□□ -0.35
SKA3-202ENST00000314759 ALPK3Q96L96 1907 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 PRAMEF33A0A0G2JMD5 474 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 GNG14A0A1W2PPG7 69 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 A0A1W2PQ09 198 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ZAR1LA6NP61 321 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 H0YIV9 168 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 PRAMEF10O60809 474 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 CPNE3O75131 537 aaKnown RBP12.87□□□□□ -0.35
SKA3-202ENST00000314759 UGT2B17O75795 530 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 CCNB2O95067 398 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 GASTP01350 101 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ATP1B2P14415 290 aaPredicted RBP12.87□□□□□ -0.35
SKA3-202ENST00000314759 ITGA2P17301 1181 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ENDOUP21128 410 aaKnown RBP12.87□□□□□ -0.35
SKA3-202ENST00000314759 CBLP22681 906 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 CHMP24386 653 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 SOX3P41225 446 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 XCR1P46094 333 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ELAVL2Q12926 359 aaKnown RBP12.87□□□□□ -0.35
SKA3-202ENST00000314759 LRRC73Q5JTD7 316 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 PLEKHS1Q5SXH7 462 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 KLHL17Q6TDP4 642 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 RNF130Q86XS8 419 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 LAX1Q8IWV1 398 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 TRIM48Q8IWZ4 208 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 AQP11Q8NBQ7 271 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 SLC7A6Q92536 515 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 OR4K3Q96R72 315 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 PIP5K1AQ99755 562 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ACOXLQ9NUZ1 547 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 RHCGQ9UBD6 479 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 FAM8A1Q9UBU6 413 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 FTSJ1Q9UET6 329 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 PCDHB7Q9Y5E2 793 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 BNIP3LO60238 219 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 IGSF6O95976 241 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 HMGA2P52926 109 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 TRIM60Q495X7 471 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 GPAT3Q53EU6 434 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.87□□□□□ -0.35
SKA3-202ENST00000314759 GCNT6Q5T4J0 391 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 FRMPD2BQ6IN97 320 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ELMOD2Q8IZ81 293 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ASAH2Q9NR71 780 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 CLN6Q9NWW5 311 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 ACSL6Q9UKU0 697 aa12.87□□□□□ -0.35
SKA3-202ENST00000314759 A0A0B4J293 547 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 CSF2P04141 144 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 SCG5P05408 212 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 FHP07954 510 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 CKMT1AP12532 417 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 IL7P13232 177 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 NAT1P18440 290 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 POU1F1P28069 291 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 NAE1Q13564 534 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 GRHL2Q6ISB3 625 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 OR2AP1Q8NGE2 309 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 HUS1BQ8NHY5 278 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 FOXJ1Q92949 421 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 RNF31Q96EP0 1072 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 TRMT61AQ96FX7 289 aaKnown RBP12.86□□□□□ -0.35
SKA3-202ENST00000314759 MED8Q96G25 268 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 METTL2AQ96IZ6 378 aaKnown RBP12.86□□□□□ -0.35
SKA3-202ENST00000314759 IL4I1Q96RQ9 567 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 MAPKAP1Q9BPZ7 522 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 SLC35A5Q9BS91 424 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 TMEM121BQ9BXQ6 578 aaPredicted RBP12.86□□□□□ -0.35
SKA3-202ENST00000314759 BRF2Q9HAW0 419 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 PRM3Q9NNZ6 103 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 C1GALT1Q9NS00 363 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 ABCB8Q9NUT2 735 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 CLEC2DQ9UHP7 191 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 ARHGEF33A8MVX0 844 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 GADD45GO95257 159 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 C6orf47O95873 294 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 YES1P07947 543 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 PRIM2P49643 509 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 CRISP1P54107 249 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 EEF1A2Q05639 463 aaKnown RBP12.86□□□□□ -0.35
SKA3-202ENST00000314759 HYAL2Q12891 473 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 TAF12Q16514 161 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 SLC44A2Q8IWA5 706 aaPredicted RBP12.86□□□□□ -0.35
SKA3-202ENST00000314759 OR7G3Q8NG95 312 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms