RNA–Protein interactions for RNA: ENST00000602784.1

RNF40-212, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 991 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-212ENST00000602784 ULK1O75385 1050 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 RDH16O75452 317 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 SEMA3DO95025 777 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 BMP10O95393 424 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 TGFB1P01137 390 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 IGHEP01854 428 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 UQCRHP07919 91 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 HSD3B1P14060 373 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 HSD3B2P26439 372 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 FOLR3P41439 243 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 NEK2P51955 445 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 PLA2G16P53816 162 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 MTTPP55157 894 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 RPS18P62269 152 aaKnown RBP13.13□□□□□ -0.31
RNF40-212ENST00000602784 RPS13P62277 151 aaKnown RBP13.13□□□□□ -0.31
RNF40-212ENST00000602784 BTN3A2P78410 334 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 DDX39BQ13838 428 aaKnown RBP13.13□□□□□ -0.31
RNF40-212ENST00000602784 UBE3DQ7Z6J8 389 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 NUDCD3Q8IVD9 361 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 GOLGA6L1Q8N7Z2 621 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 CDYL2Q8N8U2 506 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 OR51Q1Q8NH59 317 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 THAP4Q8WY91 577 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 RGMAQ96B86 450 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 ARL8AQ96BM9 186 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 CATSPER2Q96P56 530 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 OR1F2PQ96R84 312 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 SERINC2Q96SA4 455 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 SERPINI1Q99574 410 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 MECRQ9BV79 373 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 OR51B5Q9H339 312 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 MID1IP1Q9NPA3 183 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 PRDM7Q9NQW5 492 aa13.13□□□□□ -0.31
RNF40-212ENST00000602784 KMT2BQ9UMN6 2715 aaPredicted RBP13.13□□□□□ -0.31
RNF40-212ENST00000602784 SCN3AQ9NY46 2000 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 SERTM1A2A2V5 107 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 CHST10O43529 356 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 B3GALT2O43825 422 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 SCELO95171 688 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 UMODP07911 640 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 FGF4P08620 206 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 RNH1P13489 461 aaKnown RBP13.12□□□□□ -0.31
RNF40-212ENST00000602784 HMOX2P30519 316 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 CXADRP78310 365 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 MAT1AQ00266 395 aaKnown RBP13.12□□□□□ -0.31
RNF40-212ENST00000602784 KLC1Q07866 573 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 CDC20Q12834 499 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 RCN2Q14257 317 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 AP5B1Q2VPB7 878 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 VWA2Q5GFL6 755 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 GPR155Q7Z3F1 870 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 ZC3H7AQ8IWR0 971 aaKnown RBP13.12□□□□□ -0.31
RNF40-212ENST00000602784 GBP7Q8N8V2 638 aaPredicted RBP13.12□□□□□ -0.31
RNF40-212ENST00000602784 ADAMTS17Q8TE56 1095 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 SELENOMQ8WWX9 145 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 MTFMTQ96DP5 389 aaKnown RBP13.12□□□□□ -0.31
RNF40-212ENST00000602784 YIPF2Q9BWQ6 316 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 EML4Q9HC35 981 aaKnown RBP13.12□□□□□ -0.31
RNF40-212ENST00000602784 SEMA3GQ9NS98 782 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 NMRK1Q9NWW6 199 aa13.12□□□□□ -0.31
RNF40-212ENST00000602784 ZNF860A6NHJ4 632 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 HMGB1P1B2RPK0 211 aaPredicted RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 SASH3O75995 380 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 SNUPNO95149 360 aaKnown RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 B3GALT4O96024 378 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 PDYNP01213 254 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ITGB2P05107 769 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 UROSP10746 265 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 HIST1H1TP22492 207 aaPredicted RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 MMP11P24347 488 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 GRK2P25098 689 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ATP5A1P25705 553 aaKnown RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 XCR1P46094 333 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 RAP1GDS1P52306 607 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 CSTF3Q12996 717 aaKnown RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 IL10RAQ13651 578 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ERV3-1Q14264 604 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 SYT16Q17RD7 645 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 COL28A1Q2UY09 1125 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 SGO1Q5FBB7 561 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ARL13AQ5H913 290 aaPredicted RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 HHATQ5VTY9 493 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 OR4C11Q6IEV9 310 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 LAPTM4BQ86VI4 370 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 RAB43Q86YS6 212 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ZCCHC7Q8N3Z6 543 aaKnown RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 RNF175Q8N4F7 328 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ACOT4Q8N9L9 421 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 OR5T3Q8NGG3 340 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ADAMTS18Q8TE60 1221 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 TBC1D20Q96BZ9 403 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 ACBD3Q9H3P7 528 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 COPS7BQ9H9Q2 264 aaPredicted RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 LYRM4Q9HD34 91 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 PRM3Q9NNZ6 103 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 FARSBQ9NSD9 589 aaKnown RBP13.11□□□□□ -0.31
RNF40-212ENST00000602784 ZNF446Q9NWS9 450 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 NKIRAS1Q9NYS0 192 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 AHSPQ9NZD4 102 aa13.11□□□□□ -0.31
RNF40-212ENST00000602784 HCN3Q9P1Z3 774 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 119.4 ms