RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PDZD3Q86UT5 571 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 CCDC71Q8IV32 467 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 MMAAQ8IVH4 418 aaKnown RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.65□□□□□ -0.86
VPS53-220ENST00000576149 C12orf76Q8N812 135 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 NUP210Q8TEM1 1887 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 RAD51AP1Q96B01 352 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 COX14Q96I36 57 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 ASB16Q96NS5 453 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 IL17FQ96PD4 163 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 C1GALT1Q9NS00 363 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 SCN3BQ9NY72 215 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 TAS2R9Q9NYW1 312 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 SPASTQ9UBP0 616 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 TMEM98Q9Y2Y6 226 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 PRKAB1Q9Y478 270 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 PCDHGA10Q9Y5H3 936 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 MYO7AQ13402 2215 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 POM121CA8CG34 1229 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 BCAS1O75363 584 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 KELP23276 732 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 FSHRP23945 695 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 CASP9P55211 416 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 RPP38P78345 283 aaKnown RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 EEF1A2Q05639 463 aaKnown RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 RPA4Q13156 261 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 AQP6Q13520 282 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 CAMK2GQ13555 558 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 FBXO46Q6PJ61 603 aaPredicted RBP9.65□□□□□ -0.86
VPS53-220ENST00000576149 ADAMTSL4Q6UY14 1074 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 IKBIPQ70UQ0 350 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 CCDC80Q76M96 950 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 FAM129CQ86XR2 697 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 OXR1Q8N573 874 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 PLA2G15Q8NCC3 412 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 OR5AR1Q8NGP9 310 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 SPPL2AQ8TCT8 520 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 CXorf40AQ8TE69 158 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 LZICQ8WZA0 190 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 BORCS5Q969J3 196 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 HSPBAP1Q96EW2 488 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 GABARAPL3Q9BY60 117 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 GALNT8Q9NY28 637 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 PLAGL1Q9UM63 463 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 LYVE1Q9Y5Y7 322 aa9.65□□□□□ -0.86
VPS53-220ENST00000576149 TCF20Q9UGU0 1960 aaKnown RBP9.65□□□□□ -0.87
VPS53-220ENST00000576149 ADAMDEC1O15204 470 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 MRPS14O60783 128 aaKnown RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 OPN1SWP03999 348 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 IL3P08700 152 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 P2RY2P41231 377 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SCARB2Q14108 478 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SPCS2Q15005 226 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 CTF1Q16619 201 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SLC5A12Q1EHB4 618 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 PROX2Q3B8N5 592 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 IFI44LQ53G44 452 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TRIM40Q6P9F5 258 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TMC5Q6UXY8 1006 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SLC9B2Q86UD5 537 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 AMZ2Q86W34 360 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 DCUN1D3Q8IWE4 304 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SAMD14Q8IZD0 417 aaPredicted RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 NFKBIDQ8NI38 313 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 HERVK_113Q902F9 699 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TFGQ92734 400 aaPredicted RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 RORBQ92753 470 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SMARCD2Q92925 531 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 RAB7BQ96AH8 199 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TAMM41Q96BW9 452 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 HRASLS5Q96KN8 279 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 ZNF347Q96SE7 839 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 RAD21L1Q9H4I0 556 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TMEM184CQ9NVA4 438 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SLC23A2Q9UGH3 650 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 ACSL6Q9UKU0 697 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 A0A1W2PRB8 838 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 C1QTNF3-AMACRE9PGA6 284 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TNFRSF11BO00300 401 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 WBP4O75554 376 aaKnown RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 CLPXO76031 633 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 ERGP11308 486 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 TPP2P29144 1249 aaPredicted RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 CHI3L1P36222 383 aaPredicted RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 PRIM2P49643 509 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 BMXP51813 675 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 CDK6Q00534 326 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SMN1Q16637 294 aaKnown RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 ANKDD1AQ495B1 522 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 RNF130Q86XS8 419 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 KRT78Q8N1N4 520 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 C2orf73Q8N5S3 287 aaPredicted RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 ZNF540Q8NDQ6 660 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 GIPC3Q8TF64 312 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 UBE2FQ969M7 185 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 BCL7BQ9BQE9 202 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 ACAT2Q9BWD1 397 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SORBS1Q9BX66 1292 aaKnown RBP9.64□□□□□ -0.87
VPS53-220ENST00000576149 HDAC8Q9BY41 377 aa9.64□□□□□ -0.87
VPS53-220ENST00000576149 SLC6A16Q9GZN6 736 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms