RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZSWIM8A7E2V4 1837 aa13.92□□□□□ -0.18
VPS35-210ENST00000568784 ARHGAP33O14559 1287 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 VNN2O95498 520 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 CYBAP13498 195 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 HOXC8P31273 242 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 PTGER1P34995 402 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 CSNK2BP67870 215 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 KCNJ10P78508 379 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 HSPB3Q12988 150 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 TEAD4Q15561 434 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 SNAP47Q5SQN1 464 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 MFSD4BQ5TF39 518 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 USP30Q70CQ3 517 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 TRIM69Q86WT6 500 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 LAX1Q8IWV1 398 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 SLC12A9Q9BXP2 914 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 FAM83DQ9H4H8 585 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 MOV10Q9HCE1 1003 aaKnown RBP13.91□□□□□ -0.18
VPS35-210ENST00000568784 SMURF1Q9HCE7 757 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ABT1Q9ULW3 272 aaKnown RBP13.91□□□□□ -0.18
VPS35-210ENST00000568784 SSR3Q9UNL2 185 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ERVW-1Q9UQF0 538 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 SCAMP2O15127 329 aaKnown RBP13.91□□□□□ -0.18
VPS35-210ENST00000568784 CPNE3O75131 537 aaKnown RBP13.91□□□□□ -0.18
VPS35-210ENST00000568784 BCHEP06276 602 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ATXN8OSP0DMR3 200 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ITGA2P17301 1181 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 SELENOWP63302 87 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 SLBPQ14493 270 aaKnown RBP eCLIP13.91□□□□□ -0.18
VPS35-210ENST00000568784 NDUFA5Q16718 116 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ZNF284Q2VY69 593 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ATAD3CQ5T2N8 411 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 MRPS31Q92665 395 aaKnown RBP13.91□□□□□ -0.18
VPS35-210ENST00000568784 TXNDC15Q96J42 360 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 PLSCR3Q9NRY6 295 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 TEKT2Q9UIF3 430 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 DYRK1BQ9Y463 629 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 TSPAN6O43657 245 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ENTPD6O75354 484 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 SLITRK5O94991 958 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 STATHP02808 62 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 URODP06132 367 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 IFI30P13284 250 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 PTPN6P29350 595 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 ETV3P41162 512 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 CHST14Q8NCH0 376 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 PIK3R3Q92569 461 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 RIOK2Q9BVS4 552 aaKnown RBP13.91□□□□□ -0.18
VPS35-210ENST00000568784 HCN4Q9Y3Q4 1203 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 LAMA3Q16787 3333 aa13.91□□□□□ -0.18
VPS35-210ENST00000568784 TLX2O43763 284 aaPredicted RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 IFNA14P01570 189 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 ASMTP46597 345 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 TARDBPQ13148 414 aaKnown RBP eCLIP13.9□□□□□ -0.18
VPS35-210ENST00000568784 ZXDCQ2QGD7 858 aaPredicted RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 EFHD2Q96C19 240 aaPredicted RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 FABP12A6NFH5 140 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 TLR4O00206 839 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 RTCAO00442 366 aaKnown RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 PQBP1O60828 265 aaKnown RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 TIE1P35590 1138 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 EPHB3P54753 998 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 HNRNPA0Q13151 305 aaKnown RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 FADDQ13158 208 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 ASCC1Q8N9N2 400 aaKnown RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 ASB11Q8WXH4 323 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 WRAP53Q9BUR4 548 aaKnown RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 ZNF282Q9UDV7 671 aaPredicted RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 ANGPT4Q9Y264 503 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 SPIN1Q9Y657 262 aaPredicted RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 CKAP5Q14008 2032 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 ARHGEF33A8MVX0 844 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 AOC2O75106 756 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 TNFRSF21O75509 655 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 HOXB6P17509 224 aaKnown RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 LHCGRP22888 699 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 PPIBP23284 216 aaKnown RBP13.9□□□□□ -0.18
VPS35-210ENST00000568784 CTGFP29279 349 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 GPC1P35052 558 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 HNMTP50135 292 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 CAV3P56539 151 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 NFE2L1Q14494 772 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 FBXO43Q4G163 708 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 HIST2H2AA3Q6FI13 130 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 C22orf42Q6IC83 251 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 PAQR6Q6TCH4 344 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 SHFQ7M4L6 423 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 OR7G3Q8NG95 312 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 XAGE5Q8WWM1 108 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 SORCS1Q8WY21 1168 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 ART5Q96L15 291 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 SGIP1Q9BQI5 828 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 NLNQ9BYT8 704 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 CLCA3PQ9Y6N3 262 aa13.9□□□□□ -0.18
VPS35-210ENST00000568784 PRAMEF33A0A0G2JMD5 474 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 A0A1W2PQ09 198 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 A0A1W2PRB8 838 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 NEDD8-MDP1E9PL57 170 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 PRAMEF10O60809 474 aa13.89□□□□□ -0.19
VPS35-210ENST00000568784 RPLP2P05387 115 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms