RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PLD4Q96BZ4 506 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 FOPNLQ96NB1 174 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CINPQ9BW66 212 aaPredicted RBP12.79□□□□□ -0.36
CLK3-206ENST00000562078 RACGAP1Q9H0H5 632 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 MFSD1Q9H3U5 465 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CYB5R1Q9UHQ9 305 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 LCHNA4D1U4 455 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 PRRG1O14668 218 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 TRIM3O75382 744 aaPredicted RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 CRCPO75575 148 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 GPX5O75715 221 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 PDE9AO76083 593 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 RAF1P04049 648 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 RHOCP08134 193 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 RRASP10301 218 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 CTNNB1P35222 781 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 FGFBP1Q14512 234 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 TSTQ16762 297 aaKnown RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 TUSC1Q2TAM9 212 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 GLYR1Q49A26 553 aaPredicted RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 PDZK1Q5T2W1 519 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 GPR139Q6DWJ6 353 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 LRFN4Q6PJG9 635 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 SPATA19Q7Z5L4 167 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 SLC44A2Q8IWA5 706 aaPredicted RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 DPP10Q8N608 796 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 OR8K3Q8NH51 312 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 ZNF431Q8TF32 576 aaPredicted RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 UPRTQ96BW1 309 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 ZNF599Q96NL3 588 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 MGME1Q9BQP7 344 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 DPCDQ9BVM2 203 aaPredicted RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 BRINP2Q9C0B6 783 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 EXOSC4Q9NPD3 245 aaKnown RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 SEMA4BQ9NPR2 832 aaPredicted RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 MGAT4AQ9UM21 535 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 ABCG2Q9UNQ0 655 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 COPS3Q9UNS2 423 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 COMMD10Q9Y6G5 202 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 ABLIM3O94929 683 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 PRR35P0CG20 571 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 PRDX3P30048 256 aaKnown RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 ERVFC1P60507 584 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 PRKG2Q13237 762 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 EXOSC2Q13868 293 aaKnown RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 HECTD2Q5U5R9 776 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 TRILQ7L0X0 811 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 RNF130Q86XS8 419 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 OR13C4Q8NGS5 318 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 PHOSPHO2Q8TCD6 241 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 NETO1Q8TDF5 533 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 CLP1Q92989 425 aaKnown RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 PTP4A1Q93096 173 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 SGTBQ96EQ0 304 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 QRFPRQ96P65 431 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 OR5M11Q96RB7 305 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 ASPNQ9BXN1 380 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.78□□□□□ -0.36
CLK3-206ENST00000562078 SNTG1Q9NSN8 517 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 DCAF13Q9NV06 445 aaKnown RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 PDP1Q9P0J1 537 aaPredicted RBP12.78□□□□□ -0.36
CLK3-206ENST00000562078 NLKQ9UBE8 527 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 CRYL1Q9Y2S2 319 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 KLK4Q9Y5K2 254 aa12.78□□□□□ -0.36
CLK3-206ENST00000562078 ELOVL7A1L3X0 281 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 CBX4O00257 560 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 PCDH17O14917 1159 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 FZD6O60353 706 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 CLDN11O75508 207 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 S1PR4O95977 384 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 NPPAP01160 153 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 RPL35P42766 123 aaKnown RBP12.77□□□□□ -0.37
CLK3-206ENST00000562078 CDKN2DP55273 166 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 NFE2L1Q14494 772 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 FBXO43Q4G163 708 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 FAM209BQ5JX69 171 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 CACHD1Q5VU97 1274 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ALG1LQ6GMV1 187 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ATCAYQ86WG3 371 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 SAMD14Q8IZD0 417 aaPredicted RBP12.77□□□□□ -0.37
CLK3-206ENST00000562078 UFD1Q92890 307 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 MYDGFQ969H8 173 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ZBP1Q9H171 429 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 GHITMQ9H3K2 345 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ABCB9Q9NP78 766 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 KRT84Q9NSB2 600 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 RDH8Q9NYR8 311 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 CD274Q9NZQ7 290 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ZNF490Q9ULM2 529 aaPredicted RBP12.77□□□□□ -0.37
CLK3-206ENST00000562078 MYOFQ9NZM1 2061 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.77□□□□□ -0.37
CLK3-206ENST00000562078 A0A1B0GVM2 712 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 WWP2O00308 870 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 STX16O14662 325 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 PLOD3O60568 738 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 LINC00271P0C7V0 271 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ARSBP15848 533 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 TWF1Q12792 350 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 RPA4Q13156 261 aa12.77□□□□□ -0.37
CLK3-206ENST00000562078 ZNF177Q13360 481 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms