RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CENPXA8MT69 81 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 DNAJB5O75953 348 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 PTTG1O95997 202 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 STATHP02808 62 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 ACLYP53396 1101 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 INSL4Q14641 139 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 STARD3Q14849 445 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 TBCEQ15813 527 aaPredicted RBP11.84□□□□□ -0.51
LDLR-205ENST00000557933 DUSP7Q16829 419 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 TRIM71Q2Q1W2 868 aaKnown RBP11.84□□□□□ -0.51
LDLR-205ENST00000557933 SERPINA11Q86U17 422 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 ASCC1Q8N9N2 400 aaKnown RBP11.84□□□□□ -0.51
LDLR-205ENST00000557933 KBTBD8Q8NFY9 601 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 RAB8BQ92930 207 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 ST6GAL2Q96JF0 529 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 ZDHHC6Q9H6R6 413 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 GIMAP4Q9NUV9 329 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 VPS29Q9UBQ0 182 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 RIMKLBQ9ULI2 386 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 PCDHGB3Q9Y5G1 929 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 PCDHGA2Q9Y5H1 932 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 CLCA3PQ9Y6N3 262 aa11.84□□□□□ -0.51
LDLR-205ENST00000557933 AP2A2O94973 939 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 GPX2P18283 190 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 TNNI3P19429 210 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 FADDQ13158 208 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 FAM131AQ6UXB0 335 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 IPCEF1Q8WWN9 437 aaPredicted RBP11.83□□□□□ -0.51
LDLR-205ENST00000557933 MCCC1Q96RQ3 725 aaPredicted RBP11.83□□□□□ -0.51
LDLR-205ENST00000557933 SGK2Q9HBY8 427 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 MARCH5Q9NX47 278 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 SH2B3Q9UQQ2 575 aa11.83□□□□□ -0.51
LDLR-205ENST00000557933 TRBV4-1A0A0J9YWV2 114 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 FZD6O60353 706 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 SOX6P35712 828 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 RPS13P62277 151 aaKnown RBP11.83□□□□□ -0.52
LDLR-205ENST00000557933 RING1Q06587 406 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 ZNF79Q15937 498 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 C22orf42Q6IC83 251 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 CRTC1Q6UUV9 634 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 TMPRSS11BQ86T26 416 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 ELMOD1Q8N336 334 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 NLGN4YQ8NFZ3 816 aaPredicted RBP11.83□□□□□ -0.52
LDLR-205ENST00000557933 C17orf50Q8WW18 174 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 EFHD2Q96C19 240 aaPredicted RBP11.83□□□□□ -0.52
LDLR-205ENST00000557933 DOHHQ9BU89 302 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.83□□□□□ -0.523e-6■□□□□ 10.6
LDLR-205ENST00000557933 GABARAPL1Q9H0R8 117 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 SMURF1Q9HCE7 757 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 PRKAB1Q9Y478 270 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 KCNE1BA0A087WTH5 132 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 MEIOCA2RUB1 952 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 SAGE2PA6NJ88 616 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 H7C0S8 307 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 AKR7A2O43488 359 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 CDRT1O95170 752 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 CYP17A1P05093 508 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 PRPS2P11908 318 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 PRPS1L1P21108 318 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 CD70P32970 193 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 SPAM1P38567 509 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 HNF4AP41235 474 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 TUBA1BP68363 451 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 C1orf53Q5VUE5 145 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 ERAP2Q6P179 960 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 CERS6Q6ZMG9 384 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 SLC24A5Q71RS6 500 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 TUBA1AQ71U36 451 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 ZNF740Q8NDX6 193 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 FBXO22Q8NEZ5 403 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 CMTM7Q96FZ5 175 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 COL21A1Q96P44 957 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 SLC35A5Q9BS91 424 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 PRR14Q9BWN1 585 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 PCDHB11Q9Y5F2 797 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 PRUNE2Q8WUY3 3088 aa11.83□□□□□ -0.52
LDLR-205ENST00000557933 A0A0G2JN53 185 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 ISPDA4D126 451 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 SH3BP5O60239 455 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 NCR1O76036 304 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 SEMG1P04279 462 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 CHMP24386 653 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 PFN3P60673 137 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 ALDH6A1Q02252 535 aaKnown RBP11.82□□□□□ -0.52
LDLR-205ENST00000557933 GPR17Q13304 367 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 MRPL58Q14197 206 aaKnown RBP11.82□□□□□ -0.52
LDLR-205ENST00000557933 SLC5A12Q1EHB4 618 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 PRSS53Q2L4Q9 553 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 TTLL9Q3SXZ7 439 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 SYCE2Q6PIF2 218 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 SYNPOQ8N3V7 929 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 ASB15Q8WXK1 588 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 UROC1Q96N76 676 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 PITX2Q99697 317 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 ABCG4Q9H172 646 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 ZNF556Q9HAH1 456 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 DNAJC11Q9NVH1 559 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 TMPRSS11EQ9UL52 423 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 A0A0B4J293 547 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 WASHC1A8K0Z3 465 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms