RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 SRSF6Q13247 344 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 MAP7Q14244 749 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 PDCD2Q16342 344 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 XKR7Q5GH72 579 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 OR4C11Q6IEV9 310 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 PRMT9Q6P2P2 845 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 TRIM40Q6P9F5 258 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 FAM198BQ6UWH4 519 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 RIPOR1Q6ZS17 1223 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 RNF165Q6ZSG1 346 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 WDR75Q8IWA0 830 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 DDIASQ8IXT1 998 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 NLGN4XQ8N0W4 816 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 METTL4Q8N3J2 472 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 GBP7Q8N8V2 638 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 ACOT4Q8N9L9 421 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 NLGN4YQ8NFZ3 816 aaPredicted RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 CT55Q8WUE5 264 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 CHTF18Q8WVB6 975 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 COL26A1Q96A83 441 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 RGMAQ96B86 450 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 NAF1Q96HR8 494 aaKnown RBP12.14□□□□□ -0.47
SHMT2-227ENST00000557269 C7orf26Q96N11 449 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 KCNC2Q96PR1 638 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 HCN3Q9P1Z3 774 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 VPS29Q9UBQ0 182 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 CTSFQ9UBX1 484 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 PADI1Q9ULC6 663 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 NCOR2Q9Y618 2525 aa12.14□□□□□ -0.47
SHMT2-227ENST00000557269 LOC101059948A0A1B0GTJ6 334 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 ATP6AP2A0A1C7CYW4 349 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 H0YIG0 161 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 SLC28A1O00337 649 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CHST10O43529 356 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 TMPRSS11DO60235 418 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 ATP6AP2O75787 350 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 SEMA3DO95025 777 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CHEK2O96017 543 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 KLK1P06870 262 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 FBLP22087 321 aaKnown RBP12.13□□□□□ -0.47
SHMT2-227ENST00000557269 HIST1H1TP22492 207 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-227ENST00000557269 F8A1P23610 371 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 TPP2P29144 1249 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-227ENST00000557269 STAT5AP42229 794 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 AVPR1BP47901 424 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 MTTPP55157 894 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CLN3Q13286 438 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 DSG2Q14126 1118 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 AP5B1Q2VPB7 878 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 SPDYAQ5MJ70 313 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 ARHGAP40Q5TG30 622 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 VWA5B1Q5TIE3 1220 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 COMMD6Q7Z4G1 85 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CACNA2D3Q8IZS8 1091 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CA13Q8N1Q1 262 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 ESX1Q8N693 406 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 C1orf52Q8N6N3 182 aaKnown RBP12.13□□□□□ -0.47
SHMT2-227ENST00000557269 FGF11Q92914 225 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 MVB12AQ96EY5 273 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 C11orf24Q96F05 449 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-227ENST00000557269 FAR2Q96K12 515 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 TBCDQ9BTW9 1192 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 NUF2Q9BZD4 464 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CCDC134Q9H6E4 229 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CCDC86Q9H6F5 360 aaKnown RBP12.13□□□□□ -0.47
SHMT2-227ENST00000557269 DDX31Q9H8H2 851 aaKnown RBP12.13□□□□□ -0.47
SHMT2-227ENST00000557269 CDC14AQ9UNH5 594 aa12.13□□□□□ -0.47
SHMT2-227ENST00000557269 A0A0A6YYD5 115 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 OR2W5A6NFC9 320 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 FAM227AF5H4B4 570 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 LSM1O15116 133 aaKnown RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 POLR3GO15318 223 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 JRKO75564 520 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 RSL1D1O76021 490 aaKnown RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 SCELO95171 688 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 CCNYL3P0C7X3 344 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 LIPCP11150 499 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 AGXTP21549 392 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 SSR2P43308 183 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 EFNA3P52797 238 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 TGM3Q08188 693 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 SLAMF1Q13291 335 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 ERV3-1Q14264 604 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 KIAA0040Q15053 153 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 IMPG1Q17R60 797 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 RFTN2Q52LD8 501 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 VWA2Q5GFL6 755 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 MLIPQ5VWP3 458 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 MRPL14Q6P1L8 145 aaKnown RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 SHISA6Q6ZSJ9 500 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 OVCH1Q7RTY7 1134 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 VASH2Q86V25 355 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 CRLF3Q8IUI8 442 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 ZC3H7AQ8IWR0 971 aaKnown RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 SRFBP1Q8NEF9 429 aaKnown RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 OR51Q1Q8NH59 317 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 PIWIL2Q8TC59 973 aaKnown RBP12.12□□□□□ -0.47
SHMT2-227ENST00000557269 UCN3Q969E3 161 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 C19orf60Q96EN9 201 aa12.12□□□□□ -0.47
SHMT2-227ENST00000557269 THOC1Q96FV9 657 aaKnown RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms