RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 TLR4O00206 839 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TSPAN6O43657 245 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 NOBOXO60393 691 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PRKD3O94806 890 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SNX4O95219 450 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 MATN4O95460 622 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 ANGPTL1O95841 491 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 MSL3P1P0C860 447 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TRAPPC2P0DI81 140 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TRAPPC2BP0DI82 140 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PCNAP12004 261 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CD59P13987 128 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CD36P16671 472 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 NAGAP17050 411 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CYP2A7P20853 494 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 NMBRP28336 390 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 HTR1EP28566 365 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 FMO4P31512 558 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TGFBR1P36897 503 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CTSKP43235 329 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 AP1S1P61966 158 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 IL5RAQ01344 420 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 MVKQ03426 396 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CHRNB3Q05901 458 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CDK5R2Q13319 367 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 IL18R1Q13478 541 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PUM1Q14671 1186 aaKnown RBP eCLIP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SETMARQ53H47 684 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SIRPB2Q5JXA9 342 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 NXNL2Q5VZ03 156 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 ALG1LQ6GMV1 187 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 GLYATQ6IB77 296 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 BRAT1Q6PJG6 821 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CYHR1Q6ZMK1 362 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 ZNF517Q6ZMY9 492 aaPredicted RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RPS27LQ71UM5 84 aaKnown RBP7.37□□□□□ -1.23
LIMA1-216ENST00000552909 NLGN4XQ8N0W4 816 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 AMER2Q8N7J2 671 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 RNF170Q96K19 258 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 CAMK1GQ96NX5 476 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 TRMOQ9BU70 441 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 KIFC1Q9BW19 673 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 C1QTNF2Q9BXJ5 285 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 EXD2Q9NVH0 621 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 SCN3BQ9NY72 215 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 EHD3Q9NZN3 535 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 MAGEL2Q9UJ55 1249 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 C3orf18Q9UK00 162 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 MKLN1Q9UL63 735 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 BTBD3Q9Y2F9 522 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 PCDHGB6Q9Y5F9 930 aa7.37□□□□□ -1.23
LIMA1-216ENST00000552909 DMXL2Q8TDJ6 3036 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 A0A0X1KG70 313 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TEX51A0A1B0GUA7 166 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PNMA8CA0A1B0GUJ8 204 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 A0A1W2PP18 115 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PRMT5O14744 637 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 CAPN5O15484 640 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SSX4O60224 188 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SUPT7LO94864 414 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SEMA3DO95025 777 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 FADS2O95864 444 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 EPOP01588 193 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SLC4A1P02730 911 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 AHSGP02765 367 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ATXN1LP0C7T5 689 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 IL7P13232 177 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 HNRNPA2B1P22626 353 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 XPAP23025 273 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 MMP12P39900 470 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SLC12A2P55011 1212 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 KCNK10P57789 538 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 CTAG1AP78358 180 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 GPR50Q13585 617 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TEAD4Q15561 434 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SULT1C3Q6IMI6 304 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 KIAA1161Q6NSJ0 714 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 BLOC1S3Q6QNY0 202 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 GCNT7Q6ZNI0 430 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 VN1R5Q7Z5H4 357 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 RAB43Q86YS6 212 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 MICU2Q8IYU8 434 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SLC22A18ASQ8N1D0 253 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 SVOPLQ8N434 492 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 PPHLN1Q8NEY8 458 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 OR13H1Q8NG92 308 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 CNIH3Q8TBE1 160 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 FUBP1Q96AE4 644 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 C3orf30Q96M34 536 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 NARFLQ9H6Q4 476 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 ZBTB20Q9HC78 741 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 MBNL1Q9NR56 388 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 DNAJB9Q9UBS3 223 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 RAI2Q9Y5P3 530 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 TPRP12270 2363 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 HMX3A6NHT5 357 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 LOC110117498-PIK3R3F6TDL0 507 aa7.36□□□□□ -1.23
LIMA1-216ENST00000552909 UBFD1O14562 309 aaKnown RBP7.36□□□□□ -1.23
LIMA1-216ENST00000552909 GNGT2O14610 69 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms