RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 KLHL42Q9P2K6 505 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 RHCGQ9UBD6 479 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 FAM8A1Q9UBU6 413 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CD84Q9UIB8 345 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OGDHLQ9ULD0 1010 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 DUSP12Q9UNI6 340 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 V9GYH0 126 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 USP34Q70CQ2 3546 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PLXND1Q9Y4D7 1925 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 FAM172BPA6NC97 362 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PDZK1P1A8MUH7 402 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GFYI3L273 518 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 EIF3FO00303 357 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SGTAO43765 313 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 KRT75O95678 551 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GASTP01350 101 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GBAP04062 536 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CKMT1AP12532 417 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ANXA8P13928 327 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OR1D2P34982 312 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OPRD1P41143 372 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CRATP43155 626 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LIMS1P48059 325 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SMCPP49901 116 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 HNMTP50135 292 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 HBA1P69905 142 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 IRF8Q02556 426 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ACSM2AQ08AH3 577 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CSTF3Q12996 717 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SLAMF1Q13291 335 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 PLD1Q13393 1074 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GANABQ14697 944 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 MPEG1Q2M385 716 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LEXMQ3ZCV2 418 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 XKR6Q5GH73 641 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 EEF1AKMT2Q5JPI9 291 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CPTPQ5TA50 214 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ACSM2BQ68CK6 577 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF544Q6NX49 715 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ANGPTL8Q6UXH0 198 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TMC5Q6UXY8 1006 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 BCDIN3DQ7Z5W3 292 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM150AQ86TG1 271 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LAX1Q8IWV1 398 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 NPAS3Q8IXF0 933 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 OR8H2Q8N162 312 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CBARPQ8N350 705 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 LILRA3Q8N6C8 439 aaPredicted RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 NFKBIDQ8NI38 313 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GPR151Q8TDV0 419 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 C17orf50Q8WW18 174 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TRNT1Q96Q11 434 aaKnown RBP5.2□□□□□ -1.58
LIMA1-212ENST00000552491 FAM129BQ96TA1 746 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 GDF15Q99988 308 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 SLC30A2Q9BRI3 323 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CCDC32Q9BV29 185 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CNPPD1Q9BV87 410 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CDCA4Q9BXL8 241 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 TRIM39Q9HCM9 518 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 FTSJ1Q9UET6 329 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF221Q9UK13 617 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 POFUT2Q9Y2G5 429 aa5.2□□□□□ -1.58
LIMA1-212ENST00000552491 CKAP5Q14008 2032 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 IGLV3-16A0A075B6K0 115 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 A0A075B6Q4 140 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 GLTPD2A6NH11 291 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 FFAR1O14842 300 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ADAMDEC1O15204 470 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SEPT4O43236 478 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 BNIP3LO60238 219 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 C8GP07360 202 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 GALTP07902 379 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ANXA4P09525 319 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 HIST1H2AGP0C0S8 130 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF8P17098 575 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 HIST1H2ADP20671 130 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CBLP22681 906 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 PPIBP23284 216 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CHMP24386 653 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 PTX3P26022 381 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CNR2P34972 360 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 FEN1P39748 380 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CTSOP43234 321 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 STK19P49842 368 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CCL23P55773 120 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 C21orf58P58505 322 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SMAD3P84022 425 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 MC1RQ01726 317 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 EEF1A2Q05639 463 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF33BQ06732 778 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 MADCAM1Q13477 382 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CDH18Q13634 790 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 DMC1Q14565 340 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TEAD4Q15561 434 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TAB1Q15750 504 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TCTN1Q2MV58 587 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TIMM50Q3ZCQ8 353 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 FAM180BQ6P0A1 224 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 PAQR6Q6TCH4 344 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 OTOP2Q7RTS6 562 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms