RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 COPS7BQ9H9Q2 264 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SMURF2Q9HAU4 748 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SERHLQ9NQF3 203 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 POT1Q9NUX5 634 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 IMP3Q9NV31 184 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TAS2R13Q9NYV9 303 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PRSS50Q9UI38 385 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TRMT6Q9UJA5 497 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RALYQ9UKM9 306 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CORO1CQ9ULV4 474 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 VWA7Q9Y334 891 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 AP1M2Q9Y6Q5 423 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RNF215Q9Y6U7 377 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 COLEC10Q9Y6Z7 277 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 U3KQA8 63 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TP53BP1Q12888 1972 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SETXQ7Z333 2677 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CNOT1A5YKK6 2376 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TDRD6O60522 2096 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 LRP4O75096 1905 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PLXNB3Q9ULL4 1909 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 A8MXE2 369 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TMEM233B4DJY2 109 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PPM1DO15297 605 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RIPK2O43353 540 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GPC4O75487 556 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SLCO2B1O94956 709 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RPN2P04844 631 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TUBBP07437 444 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 FTH1P19P0C7X4 201 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PNLIPP16233 465 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 NDUFS1P28331 727 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SPRP35270 261 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GP5P40197 560 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 BUD31P41223 144 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 FASLGP48023 281 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ACADVLP49748 655 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 HK2P52789 917 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 UBE2IP63279 158 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 E2F1Q01094 437 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ABRQ12979 859 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 EFTUD2Q15029 972 aaKnown RBP eCLIP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 UAP1Q16222 522 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 KLHL38Q2WGJ6 581 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RBM20Q5T481 1227 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 HECTD2Q5U5R9 776 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CAPRIN2Q6IMN6 1127 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 KLHL24Q6TFL4 600 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SUSD1Q6UWL2 747 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ZC3HC1Q86WB0 502 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 C17orf82Q86X59 251 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RBM12BQ8IXT5 1001 aaKnown RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SLC22A15Q8IZD6 547 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 DCBLD1Q8N8Z6 715 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CFAP61Q8NHU2 1237 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 FBXO30Q8TB52 745 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 METTL6Q8TCB7 284 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 UBLCP1Q8WVY7 318 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 TFGQ92734 400 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CCDC120Q96HB5 630 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 VPS39Q96JC1 886 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CLPTM1LQ96KA5 538 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RMDN2Q96LZ7 410 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GPR21Q99679 349 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CCDC3Q9BQI4 270 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CCDC77Q9BR77 488 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 KLHL4Q9C0H6 718 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RHOJQ9H4E5 214 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 MVB12BQ9H7P6 319 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SYNDIG1Q9H7V2 258 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 NRIP3Q9NQ35 241 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 RRAGDQ9NQL2 400 aaPredicted RBP4.92□□□□□ -1.62
CLIP1-217ENST00000543205 SNTG1Q9NSN8 517 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 GALPQ9UBC7 116 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ADAMTS6Q9UKP5 1117 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 ASF1AQ9Y294 204 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 DHRS7Q9Y394 339 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 PCDHGA1Q9Y5H4 931 aa4.92□□□□□ -1.62
CLIP1-217ENST00000543205 CABIN1Q9Y6J0 2220 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 POC1B-GALNT4F8VUJ3 575 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 ZBTB14O43829 449 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 RPLP0P05388 317 aaKnown RBP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 INHBAP08476 426 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 ABHD2P08910 425 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 ZGLP1P0C6A0 271 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CBSLP0DN79 551 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 UBL4AP11441 157 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CD9P21926 228 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 FDXRP22570 491 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CBSP35520 551 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 RGS4P49798 205 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CDKN2DP55273 166 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 OR1D5P58170 312 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 C21orf58P58505 322 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CCL7P80098 99 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 TARDBPQ13148 414 aaKnown RBP eCLIP4.91□□□□□ -1.62
CLIP1-217ENST00000543205 LSAMPQ13449 338 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 CAMK2DQ13557 499 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 SPIDRQ14159 915 aa4.91□□□□□ -1.62
CLIP1-217ENST00000543205 PRICKLE4Q2TBC4 344 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms