RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 KLHL6Q8WZ60 621 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 CCT6BQ92526 530 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 RSC1A1Q92681 617 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 USP7Q93009 1102 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 TM4SF19Q96DZ7 209 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 TRAPPC9Q96Q05 1148 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 FRG2BQ96QU4 278 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 SHCBP1LQ9BZQ2 653 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 NSRP1Q9H0G5 558 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 MEAF6Q9HAF1 191 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 KCNK13Q9HB14 408 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 TNFRSF12AQ9NP84 129 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 ABCF3Q9NUQ8 709 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 FGFR1OP2Q9NVK5 253 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 GEMIN8Q9NWZ8 242 aaKnown RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 KLHL14Q9P2G3 628 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 FTSJ1Q9UET6 329 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 PILRAQ9UKJ1 303 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 TIMM22Q9Y584 194 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 PCDHGA1Q9Y5H4 931 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 USH1CQ9Y6N9 552 aa7.07□□□□□ -1.28
CD44-228ENST00000528455 KMT2BQ9UMN6 2715 aaPredicted RBP7.07□□□□□ -1.28
CD44-228ENST00000528455 MN1Q10571 1320 aaPredicted RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 ASPMQ8IZT6 3477 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 A0A1W2PQM1 296 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SLC9B1P1A6NJY1 282 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 TMX2-CTNND1H3BSU7 103 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 MANBAO00462 879 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 TXNDC9O14530 226 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 RGS14O43566 566 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 OR1F1O43749 312 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SNX3O60493 162 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 CLEC3AO75596 197 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SERPINA6P08185 405 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ANKRD34CP0C6C1 535 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 KITP10721 976 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 IMPDH2P12268 514 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 CDH3P22223 829 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 PRPH2P23942 346 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 PSMB5P28074 263 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 LSSP48449 732 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 IRX1P78414 480 aaPredicted RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 HSD11B2P80365 405 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 CBX1P83916 185 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 TRA2AQ13595 282 aaKnown RBP eCLIP7.06□□□□□ -1.28
CD44-228ENST00000528455 CUL3Q13618 768 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ABRAXAS2Q15018 415 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 RBBP5Q15291 538 aaKnown RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 AMZ1Q400G9 498 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 TMTC4Q5T4D3 741 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 DEPDC1Q5TB30 811 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 CACHD1Q5VU97 1274 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 FCRL6Q6DN72 434 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 CLEC6AQ6EIG7 209 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 IRGCQ6NXR0 463 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 CCDC81Q6ZN84 652 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 Q6ZSR9 355 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 LARP4Q71RC2 724 aaKnown RBP eCLIP7.06□□□□□ -1.28
CD44-228ENST00000528455 ARHGAP22Q7Z5H3 698 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 TMPRSS11BQ86T26 416 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SLCO6A1Q86UG4 719 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 MYLK4Q86YV6 388 aaPredicted RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 DNAJC22Q8N4W6 341 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ANKS4BQ8N8V4 417 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 MFSD9Q8NBP5 474 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 DNAJB8Q8NHS0 232 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ACTRT2Q8TDY3 377 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SELENOMQ8WWX9 145 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 MTFMTQ96DP5 389 aaKnown RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 CMTM7Q96FZ5 175 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 MAELQ96JY0 434 aaKnown RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 OR2A5Q96R48 311 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 GFM1Q96RP9 751 aaKnown RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 MAP3K3Q99759 626 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ELAC2Q9BQ52 826 aaKnown RBP7.06□□□□□ -1.28
CD44-228ENST00000528455 TUBB1Q9H4B7 451 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ELOVL6Q9H5J4 265 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 PDE7BQ9NP56 450 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SLC6A20Q9NP91 592 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 MRGBPQ9NV56 204 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 RIC8BQ9NVN3 520 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SIRT5Q9NXA8 310 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 AHSPQ9NZD4 102 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 VPS29Q9UBQ0 182 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ZFP69BQ9UJL9 534 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 KLK13Q9UKR3 277 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SH2B3Q9UQQ2 575 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 BTRCQ9Y297 605 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 CCL27Q9Y4X3 112 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 DMXL2Q8TDJ6 3036 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 SPEGQ15772 3267 aa7.06□□□□□ -1.28
CD44-228ENST00000528455 ZZEF1O43149 2961 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 USP24Q9UPU5 2620 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 IGHV5-51A0A0C4DH38 117 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 LRIT2A6NDA9 550 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 URADA6NGE7 173 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 MAGEB17A8MXT2 336 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 TMEM233B4DJY2 109 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 FFAR3O14843 346 aa7.05□□□□□ -1.28
CD44-228ENST00000528455 GPR42O15529 346 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms