RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, human

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-208	ENST00000504489	SERPINI1	Q99574	410 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	ELOVL6	Q9H5J4	265 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	WDR54	Q9H977	334 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	BRF2	Q9HAW0	419 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	EML4	Q9HC35	981 aa	Known RBP	11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	NAALAD2	Q9Y3Q0	740 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	MAP4K5	Q9Y4K4	846 aa		11.28	□□□□□ -0.6
PDLIM5-208	ENST00000504489	USP24	Q9UPU5	2620 aa		11.27	□□□□□ -0.6
PDLIM5-208	ENST00000504489		A0A088AWK7	358 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SERTM1	A2A2V5	107 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	WDR91	A4D1P6	747 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	VSTM2B	A6NLU5	285 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SRRM3	A6NNA2	597 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	C4orf51	C9J302	202 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SGK494	L7N484	410 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	EFS	O43281	561 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ULK1	O75385	1050 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	KLF7	O75840	302 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SEMA3D	O95025	777 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	B3GALT4	O96024	378 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	PDYN	P01213	254 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SERPINE1	P05121	402 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	HSD3B1	P14060	373 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ZNF10	P21506	573 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	GRK2	P25098	689 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	HSD3B2	P26439	372 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	UCN	P55089	124 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	RAB8A	P61006	207 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SRSF6	Q13247	344 aa	Known RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SLC9A5	Q14940	896 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CHI3L2	Q15782	390 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	DEFB134	Q4QY38	66 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CRTC2	Q53ET0	693 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	UBE3D	Q7Z6J8	389 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ENDOV	Q8N8Q3	282 aa	Known RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	PPP1R14C	Q8TAE6	165 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SELENOM	Q8WWX9	145 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	RGMA	Q96B86	450 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	FAR2	Q96K12	515 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	KCNC2	Q96PR1	638 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	PAIP2	Q9BPZ3	127 aa	Known RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CENPK	Q9BS16	269 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TBCD	Q9BTW9	1192 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	NPL	Q9BXD5	320 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TGIF2	Q9GZN2	237 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ROGDI	Q9GZN7	287 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	OR51B5	Q9H339	312 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	PRM3	Q9NNZ6	103 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	MLXIPL	Q9NP71	852 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TNFRSF12A	Q9NP84	129 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	MKKS	Q9NPJ1	570 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	PRDM7	Q9NQW5	492 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	FARSB	Q9NSD9	589 aa	Known RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TRPC4	Q9UBN4	977 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ZNF282	Q9UDV7	671 aa	Predicted RBP	11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	IL17B	Q9UHF5	180 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TCFL5	Q9UL49	500 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	PADI2	Q9Y2J8	665 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TIMM22	Q9Y584	194 aa		11.27	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ZFHX4	Q86UP3	3567 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TMEM114	B3SHH9	223 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CNOT3	O75175	753 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	RDH16	O75452	317 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CREG1	O75629	220 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SNUPN	O95149	360 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ETHE1	O95571	254 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CHRNG	P07510	517 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ZGLP1	P0C6A0	271 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	UROS	P10746	265 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	NEFH	P12036	1026 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	WT1	P19544	449 aa	Predicted RBP	11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	IL10	P22301	178 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ITPKB	P27987	946 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	ARRB2	P32121	409 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TSFM	P43897	325 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	PLA2G16	P53816	162 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	MTTP	P55157	894 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	FOXA1	P55317	472 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	BTN3A2	P78410	334 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	MC1R	Q01726	317 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	OCA2	Q04671	838 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CSTF3	Q12996	717 aa	Known RBP	11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	NKG7	Q16617	165 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	AP5B1	Q2VPB7	878 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SGO1	Q5FBB7	561 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TCHHL1	Q5QJ38	904 aa	Predicted RBP	11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CES4A	Q5XG92	561 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	RNF165	Q6ZSG1	346 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	CUZD1	Q86UP6	607 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	GBP7	Q8N8V2	638 aa	Predicted RBP	11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	OR2Y1	Q8NGV0	311 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	OR51Q1	Q8NH59	317 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	RAB3IL1	Q8TBN0	382 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	STT3B	Q8TCJ2	826 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	MGARP	Q8TDB4	240 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	KCNA7	Q96RP8	456 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SERINC2	Q96SA4	455 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SPSB2	Q99619	263 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	TMUB1	Q9BVT8	246 aa		11.26	□□□□□ -0.61
PDLIM5-208	ENST00000504489	SHCBP1L	Q9BZQ2	653 aa		11.26	□□□□□ -0.61

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