RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 UBXN11Q5T124 520 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 SELENOMQ8WWX9 145 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 FBXW5Q969U6 566 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 CD244Q9BZW8 370 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 TXNRD2Q9NNW7 524 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 C11orf16Q9NQ32 467 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 RHCGQ9UBD6 479 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 ZNF222Q9UK12 451 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 FZD4Q9ULV1 537 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 PADI2Q9Y2J8 665 aa11.24□□□□□ -0.61
HDAC4-210ENST00000493582 ANKRD36A6QL64 1941 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ZSWIM8A7E2V4 1837 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 PRAMEF25A6NGN4 478 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 TOR1AO14656 332 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ADAMDEC1O15204 470 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 NUPL2O15504 423 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 GCM2O75603 506 aaPredicted RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 EPOP01588 193 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 DARSP14868 501 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 RHOQP17081 205 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 CFL1P23528 166 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 HMGCLP35914 325 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 TTPAP49638 278 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 GANABQ14697 944 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 GRK1Q15835 563 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 LEXMQ3ZCV2 418 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 MPPE1Q53F39 396 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 TMEM81Q6P7N7 255 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 OTOP2Q7RTS6 562 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 WDR53Q7Z5U6 358 aaPredicted RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 NELL1Q92832 810 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 KLRG1Q96E93 195 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ELOVL6Q9H5J4 265 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 PPP1R3EQ9H7J1 279 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ANKRA2Q9H9E1 313 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 TPT1P8Q9HAU6 139 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 NDUFB11Q9NX14 153 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ASIC5Q9NY37 505 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 SH3BP4Q9P0V3 963 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ING4Q9UNL4 249 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 A0A0A6YYJ9 748 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 RPS10-NUDT3A0A1W2PQS6 291 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 C2orf81A6NN90 581 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 WASH4PA8MWX3 477 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 FAM227AF5H4B4 570 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 PITPNM1O00562 1244 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 HPGDSO60760 199 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 SLC43A1O75387 559 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 IGFBP1P08833 259 aaPredicted RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 SMPD1P17405 629 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 EXOSC2Q13868 293 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ANGPT1Q15389 498 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ZNF628Q5EBL2 1059 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 MS4A13Q5J8X5 152 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ZNF57Q68EA5 555 aaPredicted RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 LSM14AQ8ND56 463 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 OR4C15Q8NGM1 316 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 OR52P1PQ8NH57 321 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 PIH1D2Q8WWB5 315 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 USP7Q93009 1102 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 MARC2Q969Z3 335 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 AP2M1Q96CW1 435 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ZC3HAV1LQ96H79 300 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 TRIB3Q96RU7 358 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 KATNB1Q9BVA0 655 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 ZFP64Q9NPA5 681 aa11.23□□□□□ -0.61
HDAC4-210ENST00000493582 TLR8Q9NR97 1041 aaKnown RBP11.23□□□□□ -0.61
HDAC4-210ENST00000493582 SH3D21A4FU49 640 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CHP2O43745 196 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 RAMP2O60895 175 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 IL1AP01583 271 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 EPB42P16452 691 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 RGRP47804 291 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 INPP1P49441 399 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 EPHA5P54756 1037 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 PCDH1Q08174 1060 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 KCNC3Q14003 757 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 SF1Q15637 639 aaKnown RBP11.22□□□□□ -0.61
HDAC4-210ENST00000493582 HSDL2Q6YN16 418 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 LRRTM3Q86VH5 581 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 TRIM69Q86WT6 500 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 SYNPOQ8N3V7 929 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CARNMT1Q8N4J0 409 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.22□□□□□ -0.61
HDAC4-210ENST00000493582 C1GALT1C1Q96EU7 318 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CIPCQ9C0C6 399 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 SLC28A3Q9HAS3 691 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 PRDM5Q9NQX1 630 aaPredicted RBP11.22□□□□□ -0.61
HDAC4-210ENST00000493582 GBF1Q92538 1859 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 A0A1W2PQH9 124 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 PCDH7O60245 1069 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 GASTP01350 101 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 LHCGRP22888 699 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 SELENOWP63302 87 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 ARHGEF7Q14155 803 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 ANGPTL8Q6UXH0 198 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CLDN19Q8N6F1 224 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 CLDN22Q8N7P3 220 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 AQP11Q8NBQ7 271 aa11.22□□□□□ -0.61
HDAC4-210ENST00000493582 NELL2Q99435 816 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms