RNA–Protein interactions for RNA: ENST00000489406.1

UFD1-209, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 2

Gene UFD1, Length 994 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-209ENST00000489406 CCNFP41002 786 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 CRYZQ08257 329 aaKnown RBP13.81□□□□□ -0.2
UFD1-209ENST00000489406 KLHL30Q0D2K2 578 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 DUSP8Q13202 625 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 TMED2Q15363 201 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 SF3B4Q15427 424 aaKnown RBP eCLIP13.81□□□□□ -0.22e-7■■■□□ 16
UFD1-209ENST00000489406 MEI1Q5TIA1 1274 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 QSOX2Q6ZRP7 698 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 IL17RELQ6ZVW7 336 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 BZW1Q7L1Q6 419 aaKnown RBP13.81□□□□□ -0.2
UFD1-209ENST00000489406 RASGEF1CQ8N431 466 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 ZMYND19Q96E35 227 aaPredicted RBP13.81□□□□□ -0.2
UFD1-209ENST00000489406 MARK4Q96L34 752 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 PRAP1Q96NZ9 151 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 GBA3Q9H227 469 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 MYOTQ9UBF9 498 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 TSR3Q9UJK0 312 aaKnown RBP13.81□□□□□ -0.2
UFD1-209ENST00000489406 TRHDEQ9UKU6 1024 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 MYO6Q9UM54 1294 aa13.81□□□□□ -0.2
UFD1-209ENST00000489406 A8MXE2 369 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 ADAM11O75078 769 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 ERGP11308 486 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 FOXN2P32314 431 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 NR2C2P49116 596 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 SPARCL1Q14515 664 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 HECTD2Q5U5R9 776 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 PLXDC2Q6UX71 529 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 GOLM1Q8NBJ4 401 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 PPFIBP2Q8ND30 876 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 MAGEC3Q8TD91 643 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 ZC3HAV1LQ96H79 300 aaKnown RBP13.8□□□□□ -0.2
UFD1-209ENST00000489406 PRDM14Q9GZV8 571 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 SLCO5A1Q9H2Y9 848 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 ESRP2Q9H6T0 727 aaKnown RBP13.8□□□□□ -0.2
UFD1-209ENST00000489406 L2HGDHQ9H9P8 463 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 LAMP3Q9UQV4 416 aa13.8□□□□□ -0.2
UFD1-209ENST00000489406 IGKV3D-11A0A0A0MRZ8 115 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 CASP9P55211 416 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 TMEM249Q2WGJ8 235 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 P3H1Q32P28 736 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 CT47A1Q5JQC4 288 aaPredicted RBP13.79□□□□□ -0.2
UFD1-209ENST00000489406 PM20D2Q8IYS1 436 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.79□□□□□ -0.2
UFD1-209ENST00000489406 CAMKVQ8NCB2 501 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 OR9A1PQ8NGU1 263 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 STYXQ8WUJ0 223 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 TRMT61AQ96FX7 289 aaKnown RBP13.79□□□□□ -0.2
UFD1-209ENST00000489406 SGCZQ96LD1 299 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 FOPNLQ96NB1 174 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 SLC30A3Q99726 388 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 EBNA1BP2Q99848 306 aaKnown RBP13.79□□□□□ -0.2
UFD1-209ENST00000489406 TBL1YQ9BQ87 522 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 SFXN3Q9BWM7 321 aa13.79□□□□□ -0.2
UFD1-209ENST00000489406 PNO1Q9NRX1 252 aaKnown RBP13.79□□□□□ -0.2
UFD1-209ENST00000489406 FREM1Q5H8C1 2179 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 KCNE1BA0A087WTH5 132 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 CCDC162PA2VCL2 907 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 B3GALT4O96024 378 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 KRT1P04264 644 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 GPR143P51810 404 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 RPS15AP62244 130 aaKnown RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 RPS4XP62701 263 aaKnown RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 ABATP80404 500 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 SYDE1Q6ZW31 735 aaPredicted RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 ZNF550Q7Z398 422 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 CAND1Q86VP6 1230 aaKnown RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 VSIG1Q86XK7 387 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 LRRC25Q8N386 305 aaPredicted RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 SLC44A1Q8WWI5 657 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 ANKRD9Q96BM1 317 aaPredicted RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 TM4SF19Q96DZ7 209 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 C1orf159Q96HA4 380 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 ART5Q96L15 291 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 ALS2CR12Q96Q35 445 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 C12orf65Q9H3J6 166 aaKnown RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 C10orf88Q9H8K7 445 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 CALHM2Q9HA72 323 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 ZFP64Q9NPA5 681 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 PRDM9Q9NQV7 894 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 AIPL1Q9NZN9 384 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 ZFATQ9P243 1243 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 AAR2Q9Y312 384 aaKnown RBP13.78□□□□□ -0.2
UFD1-209ENST00000489406 SLC22A7Q9Y694 548 aa13.78□□□□□ -0.2
UFD1-209ENST00000489406 UBFD1O14562 309 aaKnown RBP13.77□□□□□ -0.21
UFD1-209ENST00000489406 ZNF354AO60765 605 aaPredicted RBP13.77□□□□□ -0.21
UFD1-209ENST00000489406 PLAUP00749 431 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 FREM3P0C091 2139 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 PSMB4P28070 264 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 PNLIPRP1P54315 467 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 DIO3P55073 304 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 KCNJ2P63252 427 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 POU6F1Q14863 301 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 ANKRD20A4Q4UJ75 823 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.77□□□□□ -0.21
UFD1-209ENST00000489406 ANKRD20A2Q5SQ80 823 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 ANKRD20A1Q5TYW2 823 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 ANKRD20A3Q5VUR7 823 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 ZNF704Q6ZNC4 412 aaPredicted RBP13.77□□□□□ -0.21
UFD1-209ENST00000489406 DNM1P46Q6ZS02 220 aa13.77□□□□□ -0.21
UFD1-209ENST00000489406 ASPGQ86U10 573 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms