RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 VANGL1Q8TAA9 524 aaPredicted RBP5.11□□□□□ -1.59
USP40-213ENST00000483216 TAF15Q92804 592 aaKnown RBP eCLIP5.11□□□□□ -1.59
USP40-213ENST00000483216 IFT74Q96LB3 600 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 C4orf45Q96LM5 186 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 ALS2CR12Q96Q35 445 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 TRIM51Q9BSJ1 452 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 FGFBP2Q9BYJ0 223 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 RABEP2Q9H5N1 569 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 TBC1D7Q9P0N9 293 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 UBN2Q6ZU65 1347 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 WDR19Q8NEZ3 1342 aa5.11□□□□□ -1.59
USP40-213ENST00000483216 N4BP2Q86UW6 1770 aaPredicted RBP5.11□□□□□ -1.59
USP40-213ENST00000483216 XIRP1Q702N8 1843 aaKnown RBP5.11□□□□□ -1.59
USP40-213ENST00000483216 URADA6NGE7 173 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 C15orf61A6NNL5 157 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 KRTAP16-1A8MUX0 517 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 CPLX1O14810 134 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 SLIT3O75094 1523 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 KRT33AO76009 404 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 NXPH2O95156 264 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 GGPS1O95749 300 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 GSTA1P08263 222 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 GHRP10912 638 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 SLC2A2P11168 524 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 KRT5P13647 590 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 SYKP43405 635 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 KIF1AQ12756 1690 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 RIPK1Q13546 671 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 MED1Q15648 1581 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 BSPRYQ5W0U4 402 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 ARMCX5Q6P1M9 558 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 IL17RELQ6ZVW7 336 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 IFT20Q8IY31 132 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 ARHGAP18Q8N392 663 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 RASGEF1AQ8N9B8 481 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 SMAP2Q8WU79 429 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 GATAD1Q8WUU5 269 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 APOBEC4Q8WW27 367 aaKnown RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 N4BP2L2Q92802 583 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 SPSB1Q96BD6 273 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 PPP1R14BQ96C90 147 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 LRRC45Q96CN5 670 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 ZNF689Q96CS4 500 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 RMDN1Q96DB5 314 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 CCDC114Q96M63 670 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 MAP3K3Q99759 626 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 NKX3-1Q99801 234 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 CCDC3Q9BQI4 270 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 JPH2Q9BR39 696 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 NSRP1Q9H0G5 558 aaKnown RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 VCXQ9H320 206 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 DNAJC4Q9NNZ3 241 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 GSN-AS1Q9NRJ2 163 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 RMND1Q9NWS8 449 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 CLIC5Q9NZA1 410 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 C5AR2Q9P296 337 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.1□□□□□ -1.59
USP40-213ENST00000483216 PPP1R3CQ9UQK1 317 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 CCL27Q9Y4X3 112 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 SAR1BQ9Y6B6 198 aa5.1□□□□□ -1.59
USP40-213ENST00000483216 TRPM3Q9HCF6 1732 aaPredicted RBP5.09□□□□□ -1.59
USP40-213ENST00000483216 LMO7Q8WWI1 1683 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 C1orf167Q5SNV9 1468 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 NCAPD2Q15021 1401 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 TRAV24A0A0B4J272 114 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 A0A0J9YWU9 116 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 ERICH2A1L162 156 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 ANTXRLA6NF34 631 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 USP27XA6NNY8 438 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 ZNF195O14628 629 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 ATP6AP2O75787 350 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 CLDN1O95832 211 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 FAM107AO95990 144 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 TCP1P17987 556 aaKnown RBP5.09□□□□□ -1.59
USP40-213ENST00000483216 LHCGRP22888 699 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 CASP14P31944 242 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 GCKP35557 465 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 MRPS25P82663 173 aaKnown RBP5.09□□□□□ -1.59
USP40-213ENST00000483216 ACTN3Q08043 901 aaPredicted RBP5.09□□□□□ -1.59
USP40-213ENST00000483216 TAF7Q15545 349 aaPredicted RBP5.09□□□□□ -1.59
USP40-213ENST00000483216 SPECC1Q5M775 1068 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 IL27RAQ6UWB1 636 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 CHST3Q7LGC8 479 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 TLK2Q86UE8 772 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 MYPOPQ86VE0 399 aaPredicted RBP5.09□□□□□ -1.59
USP40-213ENST00000483216 LMNTD2Q8IXW0 634 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 NOA1Q8NC60 698 aaKnown RBP5.09□□□□□ -1.59
USP40-213ENST00000483216 OR6J1Q8NGC5 347 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 ZNRF4Q8WWF5 429 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 PROX1Q92786 737 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 C8orf76Q96K31 380 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 SPAG5Q96R06 1193 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 CCDC28BQ9BUN5 200 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 SLC2A11Q9BYW1 496 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 VCPKMTQ9H867 229 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 MIS18AQ9NYP9 233 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 TXNDC16Q9P2K2 825 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 CHKBQ9Y259 395 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 EXOC6BQ9Y2D4 811 aa5.09□□□□□ -1.59
USP40-213ENST00000483216 ANGPTL3Q9Y5C1 460 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms