RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 ISL1P61371 349 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 KLF9Q13886 244 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 AGKQ53H12 422 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 CAVIN4Q5BKX8 364 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 RABGAP1LQ5R372 815 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 FAM159AQ6UWV7 190 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 ZNF704Q6ZNC4 412 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 ANKRD33Q7Z3H0 272 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 NANOGNBQ7Z5D8 188 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 PIM3Q86V86 326 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 KRTAP1-3Q8IUG1 177 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 CHERPQ8IWX8 916 aaKnown RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 SRRM1Q8IYB3 904 aaKnown RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 KLHDC1Q8N7A1 406 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 NRACQ8N912 160 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 LMNTD1Q8N9Z9 388 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 TRPV3Q8NET8 790 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 FGFBP3Q8TAT2 258 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 TMEM255BQ8WV15 326 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 GLYATL1Q969I3 302 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 RPL36ALQ969Q0 106 aaKnown RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 MTBPQ96DY7 904 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 COG3Q96JB2 828 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 NDNQ99608 321 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 CCDC3Q9BQI4 270 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 JPH2Q9BR39 696 aaPredicted RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 FUNDC2Q9BWH2 189 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 NFKBIZQ9BYH8 718 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 CRNKL1Q9BZJ0 848 aaKnown RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 DCLK3Q9C098 648 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 FAM192AQ9GZU8 254 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 RBM38Q9H0Z9 239 aaKnown RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 SLITRK6Q9H5Y7 841 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 OLFML3Q9NRN5 406 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 BCAP29Q9UHQ4 241 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 TEKT2Q9UIF3 430 aa3.87□□□□□ -1.79
VPS13D-207ENST00000476169 AGO1Q9UL18 857 aaKnown RBP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 SF3B1O75533 1304 aaKnown RBP eCLIP3.87□□□□□ -1.79
VPS13D-207ENST00000476169 FGD5Q6ZNL6 1462 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ANKRD61A6NGH8 418 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 E9PI62 339 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 CCL24O00175 119 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 SOCS2O14508 198 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 CTAGE5O15320 804 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ZNF208O43345 1280 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 MED7O43513 233 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 B4GALT2O60909 372 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 KDM4BO94953 1096 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 PAPSS2O95340 614 aaPredicted RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 CPNE6O95741 557 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 PSG1P11464 419 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 CSF2RAP15509 400 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 GALP22466 123 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 DGKAP23743 735 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 LMO1P25800 156 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 GJB2P29033 226 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ALDH4A1P30038 563 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 CHI3L1P36222 383 aaPredicted RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 PTGFRP43088 359 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ABCG1P45844 678 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 PRRX1P54821 245 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ATP5IP56385 69 aaPredicted RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 INHBEP58166 350 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 SEC61A1P61619 476 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 TRAP1Q12931 704 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 IFT88Q13099 833 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 WDR43Q15061 677 aaKnown RBP eCLIP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 PDK3Q15120 406 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 TRIP10Q15642 601 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ETFDHQ16134 617 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ZC2HC1CQ53FD0 456 aaPredicted RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ASPRV1Q53RT3 343 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 LIPKQ5VXJ0 399 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 OR7E24Q6IFN5 339 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 LRRC8BQ6P9F7 803 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 SYCE2Q6PIF2 218 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 UBQLNLQ8IYU4 475 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 NEXN-AS1Q8NBZ9 246 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 RNF149Q8NC42 400 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 BHLHE23Q8NDY6 225 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 RDM1Q8NG50 284 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 OR6C4Q8NGE1 309 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 PNPT1Q8TCS8 783 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 MAGEC3Q8TD91 643 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 SAP25Q8TEE9 199 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 GIPC3Q8TF64 312 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 RLN3Q8WXF3 142 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 RAB39BQ96DA2 213 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 GIMAP5Q96F15 307 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 TMEM19Q96HH6 336 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 DHTKD1Q96HY7 919 aaPredicted RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 RBM41Q96IZ5 413 aaKnown RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 C4orf36Q96KX1 117 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 C3orf30Q96M34 536 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 ZNF48Q96MX3 618 aaPredicted RBP3.86□□□□□ -1.79
VPS13D-207ENST00000476169 GPR137Q96N19 417 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 BTBD9Q96Q07 612 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 SLC25A33Q9BSK2 321 aa3.86□□□□□ -1.79
VPS13D-207ENST00000476169 GSDMCQ9BYG8 508 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms