RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	ACAP2	Q15057	778 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	PCOLCE	Q15113	449 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	TLR1	Q15399	786 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	EXT1	Q16394	746 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	TEX35	Q5T0J7	233 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	MED27	Q6P2C8	311 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	TMEM205	Q6UW68	189 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	FAM180A	Q6UWF9	173 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	IGFL3	Q6UXB1	125 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	ISCA2	Q86U28	154 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	KLHDC8A	Q8IYD2	350 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	GALNT11	Q8NCW6	608 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	OR1N1	Q8NGS0	311 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	TSLP	Q969D9	159 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	LMF1	Q96S06	567 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	SLC6A16	Q9GZN6	736 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	EHD1	Q9H4M9	534 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	ACTR8	Q9H981	624 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	IGSF5	Q9NSI5	407 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	PLA2G3	Q9NZ20	509 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	PTBP2	Q9UKA9	531 aa	Known RBP	10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	SPACA6	W5XKT8	324 aa		10.86	□□□□□ -0.67
CPNE1-222	ENST00000473373	CROCC	Q5TZA2	2017 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	LOC102723996	A0A087X1L8	192 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373		A8MUA0	341 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	MAGEB17	A8MXT2	336 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	CLEC3A	O75596	197 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	AGFG2	O95081	481 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	KLHL2	O95198	593 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	WISP3	O95389	354 aa	Predicted RBP	10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	C1QA	P02745	245 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	CNTF	P26441	200 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	GGT5	P36269	586 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	NR6A1	Q15406	480 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	TSNAXIP1	Q2TAA8	658 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	FHL5	Q5TD97	284 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	B3GNTL1	Q67FW5	361 aa	Predicted RBP	10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	AFAP1L2	Q8N4X5	818 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	SRFBP1	Q8NEF9	429 aa	Known RBP	10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	PRR7	Q8TB68	274 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	SLC44A1	Q8WWI5	657 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	SNRNP40	Q96DI7	357 aa	Known RBP	10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	SEC16B	Q96JE7	1060 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	ZNF354B	Q96LW1	612 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	ATOH8	Q96SQ7	321 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	NT5DC2	Q9H857	520 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	PRTFDC1	Q9NRG1	225 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	PNO1	Q9NRX1	252 aa	Known RBP	10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	ASF1B	Q9NVP2	202 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	STMN3	Q9NZ72	180 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	TNPO3	Q9Y5L0	923 aa	Known RBP	10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	CSAG2	Q9Y5P2	127 aa		10.85	□□□□□ -0.67
CPNE1-222	ENST00000473373	RELN	P78509	3460 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	TRIM49D1	C9J1S8	452 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	TGFB1	P01137	390 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	IFNA16	P05015	189 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	RBP1	P09455	135 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	MAOA	P21397	527 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CERS1	P27544	350 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	HNRNPH1	P31943	449 aa	Known RBP	10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	SSR2	P43308	183 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	UQCRFS1	P47985	274 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	PIK3CG	P48736	1102 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	ALDH18A1	P54886	795 aa	Known RBP	10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	MTTP	P55157	894 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	RHAG	Q02094	409 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	OC90	Q02509	493 aa	Predicted RBP	10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	GTF2H2	Q13888	395 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	MEP1A	Q16819	746 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	AP5B1	Q2VPB7	878 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	FCRLB	Q6BAA4	426 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	PLAG1	Q6DJT9	500 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	TTC19	Q6DKK2	380 aa	Predicted RBP	10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	GTF2H2C	Q6P1K8	395 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	QSOX2	Q6ZRP7	698 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373		Q6ZS92	163 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CHSY3	Q70JA7	882 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CUZD1	Q86UP6	607 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	RELL1	Q8IUW5	271 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CENPL	Q8N0S6	344 aa	Predicted RBP	10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CA13	Q8N1Q1	262 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	SLC5A8	Q8N695	610 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	FAM47B	Q8NA70	645 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373		Q8NA96	180 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	PLPP5	Q8NEB5	264 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	OR2L5	Q8NG80	312 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	RHEBL1	Q8TAI7	183 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	ADAMTS18	Q8TE60	1221 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CREB3L4	Q8TEY5	395 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	REPS1	Q96D71	796 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	MS4A6E	Q96DS6	147 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	PHF21B	Q96EK2	531 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	SERINC2	Q96SA4	455 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CCDC77	Q9BR77	488 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	ROGDI	Q9GZN7	287 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	CLK4	Q9HAZ1	481 aa	Known RBP	10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	PRDM9	Q9NQV7	894 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	LRRK2	Q5S007	2527 aa		10.84	□□□□□ -0.67
CPNE1-222	ENST00000473373	TRAV17	A0A0B4J275	112 aa		10.83	□□□□□ -0.68
CPNE1-222	ENST00000473373	CCDC189	A1A4V9	331 aa		10.83	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms