RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR4F21O95013 312 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 BCKDHAP12694 445 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 TUBG1P23258 451 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 GALNT1Q10472 559 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 PLA2G4EQ3MJ16 856 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 CCDC71LQ8N9Z2 235 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 BBS1Q8NFJ9 593 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 HSH2DQ96JZ2 352 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 SYT3Q9BQG1 590 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 HEPHQ9BQS7 1158 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 PCDHAC1Q9H158 963 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 TMEM185BQ9H7F4 350 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 NKX1-2Q9UD57 310 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 GNG8Q9UK08 70 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 SSX5O60225 188 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 AOC2O75106 756 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 TPT1P13693 172 aaKnown RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 CD97P48960 835 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF763Q0D2J5 394 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 EXOC3L2Q2M3D2 409 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 SPIN3Q5JUX0 258 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 METAP1DQ6UB28 335 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF30P17039 623 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 MAXP61244 160 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 CYS1Q717R9 158 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 SKA3Q8IX90 412 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 NPAS3Q8IXF0 933 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 VWA5B2Q8N398 1253 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 PYCR2Q96C36 320 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 G6PC3Q9BUM1 346 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 MEAF6Q9HAF1 191 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 POU2F1P14859 743 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 CAPSQ13938 189 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 NOXA1Q86UR1 476 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 KAZALD1Q96I82 304 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 KIF25Q9UIL4 384 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 CHRFAM7AQ494W8 412 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 COQ10AQ96MF6 247 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 MRPS23Q9Y3D9 190 aaKnown RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 TIMM13Q9Y5L4 95 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 NALCNQ8IZF0 1738 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 TRBC2A0A5B9 178 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 ADAM10O14672 748 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 OAS1P00973 400 aaKnown RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 GTPBP8Q8N3Z3 284 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-209ENST00000472056 OR10T2Q8NGX3 314 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 OR8K5Q8NH50 307 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 C7orf43Q8WVR3 580 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 BIRC7Q96CA5 298 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 ABCG5Q9H222 651 aa12.88□□□□□ -0.35
COL6A3-209ENST00000472056 NPIPA5E9PKD4 350 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 SHOXO15266 292 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 P2RX6O15547 441 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 HCKP08631 526 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 IL17AQ16552 155 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 LIPJQ5W064 366 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 KIAA0319LQ8IZA0 1049 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 FANK1Q8TC84 345 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 BORCS7Q96B45 105 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ACTL8Q9H568 366 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 NPIPA1Q9UND3 350 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 PLIN4Q96Q06 1357 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 BMP2P12643 396 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 FAM117BQ6P1L5 589 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ARHGAP11AQ6P4F7 1023 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 LCN9Q8WX39 176 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 PIP5K1AQ99755 562 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 DDX60Q8IY21 1712 aaKnown RBP12.87□□□□□ -0.35
COL6A3-209ENST00000472056 SCGB1D2O95969 90 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 AK1P00568 194 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 MYCLP1P12525 358 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-209ENST00000472056 CKMT2P17540 419 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 CCDC58Q4VC31 144 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 IQCHQ86VS3 1027 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 LINC00116Q8NCU8 138 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 CHDHQ8NE62 594 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-209ENST00000472056 OR14A2Q96R54 314 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ZDHHC3Q9NYG2 299 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 KLHL21Q9UJP4 597 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 CHD3Q12873 2000 aaKnown RBP12.87□□□□□ -0.35
COL6A3-209ENST00000472056 UQCRC2P22695 453 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 TAS2R39P59534 338 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 CXCR4P61073 352 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 RPP30P78346 268 aaKnown RBP12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ZNF440Q8IYI8 595 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ZMIZ2Q8NF64 920 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 AKT1S1Q96B36 256 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ANKRD33BA6NCL7 494 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 SEC14L2O76054 403 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 TSPAN15O95858 294 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 CAMK2DQ13557 499 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 MROQ9BYG7 248 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 UBE2Q2LH0YL09 131 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 MT-ND1P03886 318 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 BLOC1S1P78537 153 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 MOGSQ13724 837 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 FGL2Q14314 439 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 PDE12Q6L8Q7 609 aaKnown RBP12.87□□□□□ -0.35
COL6A3-209ENST00000472056 WFIKKN2Q8TEU8 576 aa12.87□□□□□ -0.35
COL6A3-209ENST00000472056 ZCCHC3Q9NUD5 404 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms