RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 PRDM9Q9NQV7 894 aa17.93■□□□□ 0.46
COL7A1-207ENST00000467985 PLEKHB1Q9UF11 243 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-207ENST00000467985 ERRFI1Q9UJM3 462 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-207ENST00000467985 PTBP2Q9UKA9 531 aaKnown RBP17.93■□□□□ 0.46
COL7A1-207ENST00000467985 PCDHGB6Q9Y5F9 930 aa17.93■□□□□ 0.46
COL7A1-207ENST00000467985 CELSR2Q9HCU4 2923 aa17.93■□□□□ 0.46
COL7A1-207ENST00000467985 CYSRT1A8MQ03 144 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 DNAJB6O75190 326 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 CLEC3AO75596 197 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 F10P00742 488 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 LDLRP01130 860 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 HSPA7P48741 367 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 SLC26A5P58743 744 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 LAPTM5Q13571 262 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 TRADDQ15628 312 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 PAGE2BQ5JRK9 111 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 ZNF324BQ6AW86 544 aaPredicted RBP17.92■□□□□ 0.46
COL7A1-207ENST00000467985 CEP128Q6ZU80 1094 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 SNX31Q8N9S9 440 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 WDR34Q96EX3 536 aa17.92■□□□□ 0.46
COL7A1-207ENST00000467985 ESYT3A0FGR9 886 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 LRIT2A6NDA9 550 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 RASAL1O95294 804 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 SLC35E2BP0CK96 405 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 BTN3A2P78410 334 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 HIST2H2ACQ16777 129 aaPredicted RBP17.91■□□□□ 0.46
COL7A1-207ENST00000467985 XKR6Q5GH73 641 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 HIST2H2AA3Q6FI13 130 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 LRRC70Q7Z2Q7 622 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 BEST3Q8N1M1 668 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 CA13Q8N1Q1 262 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 HORMAD2Q8N7B1 307 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 ADAMTS18Q8TE60 1221 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 CCT6BQ92526 530 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 NR4A3Q92570 626 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 MS4A6EQ96DS6 147 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 TAAR6Q96RI8 345 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 UTP23Q9BRU9 249 aaKnown RBP17.91■□□□□ 0.46
COL7A1-207ENST00000467985 CD244Q9BZW8 370 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 RHBGQ9H310 441 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 NUDT4Q9NZJ9 180 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 MMACHCQ9Y4U1 282 aa17.91■□□□□ 0.46
COL7A1-207ENST00000467985 TCRBV16S1A1N1A0A5B0 115 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 CCDC189A1A4V9 331 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 SYNDIG1LA6NDD5 238 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 ERI3O43414 337 aaKnown RBP17.9■□□□□ 0.46
COL7A1-207ENST00000467985 FAM155BO75949 473 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 LTA4HP09960 611 aaKnown RBP17.9■□□□□ 0.46
COL7A1-207ENST00000467985 TFEBP19484 476 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 HNRNPH1P31943 449 aaKnown RBP17.9■□□□□ 0.46
COL7A1-207ENST00000467985 PER3P56645 1201 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 BTG2P78543 158 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 TGM3Q08188 693 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 DOC2AQ14183 400 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 TBCCQ15814 346 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 ADPRMQ3LIE5 342 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 C4orf17Q53FE4 359 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 TRIM40Q6P9F5 258 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 CMC1Q7Z7K0 106 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 CRLF3Q8IUI8 442 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 IFT20Q8IY31 132 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 CYP4X1Q8N118 509 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 OR2L5Q8NG80 312 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 ELP5Q8TE02 316 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 IFT81Q8WYA0 676 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 REXO4Q9GZR2 422 aaKnown RBP17.9■□□□□ 0.46
COL7A1-207ENST00000467985 AICDAQ9GZX7 198 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 ALG9Q9H6U8 611 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 ZDHHC18Q9NUE0 388 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 DMGDHQ9UI17 866 aaKnown RBP17.9■□□□□ 0.46
COL7A1-207ENST00000467985 OSGIN2Q9Y236 505 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 MRPS33Q9Y291 106 aaKnown RBP17.9■□□□□ 0.46
COL7A1-207ENST00000467985 ACOT9Q9Y305 439 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 ITPR2Q14571 2701 aa17.9■□□□□ 0.46
COL7A1-207ENST00000467985 NOTCH2Q04721 2471 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 IGKV3D-11A0A0A0MRZ8 115 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 SAGE2PA6NJ88 616 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 C4orf51C9J302 202 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 CLDN4O14493 209 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 B3GALT2O43825 422 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 CCNT2O60583 730 aaKnown RBP17.89■□□□□ 0.45
COL7A1-207ENST00000467985 KERAO60938 352 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 MAOAP21397 527 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 PHBP35232 272 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 CASP2P42575 452 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 IRF8Q02556 426 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 TUBA3CQ13748 450 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 RCN2Q14257 317 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 TERF2Q15554 542 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 ZNF766Q5HY98 468 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 FCRLBQ6BAA4 426 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 TUBA3EQ6PEY2 450 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 ISCA2Q86U28 154 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 AMER2Q8N7J2 671 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 UBE2E3Q969T4 207 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 TSPYL1Q9H0U9 437 aa17.89■□□□□ 0.45
COL7A1-207ENST00000467985 A0A087X1B8 175 aa17.88■□□□□ 0.45
COL7A1-207ENST00000467985 SYCE1LA8MT33 242 aa17.88■□□□□ 0.45
COL7A1-207ENST00000467985 RNF224P0DH78 156 aa17.88■□□□□ 0.45
COL7A1-207ENST00000467985 CD46P15529 392 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms