RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 DPF2Q92785 391 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 RDH12Q96NR8 316 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 DPCDQ9BVM2 203 aaPredicted RBP8.67□□□□□ -1.02
NIPBL-202ENST00000448238 SEMA4CQ9C0C4 833 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TXNL4BQ9NX01 149 aaKnown RBP8.67□□□□□ -1.02
NIPBL-202ENST00000448238 ACSL6Q9UKU0 697 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF521Q96K83 1311 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3DA0A087WVF3 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3IA0A087WXS9 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3EA0A087X179 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3KA0A087X1G2 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3FA6NER0 549 aaPredicted RBP8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3LB9A6J9 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 USP17L7P0C7H9 530 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3HP0C7X1 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 C6P13671 934 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 LSSP48449 732 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TRAM2Q15035 370 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 SPIN4Q56A73 249 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3GQ6DHY5 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 OR2T5Q6IEZ7 315 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3CQ6IPX1 549 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 HEPHL1Q6MZM0 1159 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 NOXRED1Q6NXP6 359 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 SCIMPQ6UWF3 145 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 TBC1D3Q8IZP1 549 aaPredicted RBP8.67□□□□□ -1.02
NIPBL-202ENST00000448238 OR2T29Q8NH02 315 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 LMLNQ96KR4 655 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 HNRNPABQ99729 332 aaKnown RBP8.67□□□□□ -1.02
NIPBL-202ENST00000448238 GPATCH2LQ9NWQ4 482 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 SMPD4Q9NXE4 827 aa8.67□□□□□ -1.02
NIPBL-202ENST00000448238 CHD3Q12873 2000 aaKnown RBP8.67□□□□□ -1.02
NIPBL-202ENST00000448238 hCG_2039718K7EN88 272 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 SERPINE2P07093 398 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 GP1BBP13224 206 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 MC4RP32245 332 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 NRG1Q02297 640 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 GTF2H2Q13888 395 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 DAG1Q14118 895 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 DSC3Q14574 896 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 TSGA10IPQ3SY00 556 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 GTF2H2CQ6P1K8 395 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 RBM15BQ8NDT2 890 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 OR6T1Q8NGN1 323 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 NFKBIDQ8NI38 313 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 TRMT10AQ8TBZ6 339 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 BLNKQ8WV28 456 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 PTERQ96BW5 349 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 CNTNAP3Q9BZ76 1288 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 DCAF16Q9NXF7 216 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 ERVW-1Q9UQF0 538 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 PCF11O94913 1555 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 SOX30O94993 753 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 SPP1P10451 314 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 JUNDP17535 347 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 PAX6P26367 422 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 RFC2P35250 354 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 CDH15P55291 814 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 BTG3Q14201 252 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 GALEQ14376 348 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 MSMO1Q15800 293 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 ARHGAP11BQ3KRB8 267 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF410Q86VK4 478 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 NAXEQ8NCW5 288 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 MDC1Q14676 2089 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 FAM205AQ6ZU69 1335 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 CDK12Q9NYV4 1490 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 SCAMP3O14828 347 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 PRAF2O60831 178 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 MSX2P35548 267 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 REP15Q6BDI9 236 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 RTL6Q6ICC9 239 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 OR56A3Q8NH54 315 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 TSSK2Q96PF2 358 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF442Q9H7R0 627 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 GJB4Q9NTQ9 266 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 CD300AQ9UGN4 299 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 PCDHGA9Q9Y5G4 932 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 CPED1A4D0V7 1026 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 OR1F1O43749 312 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 SUSD5O60279 629 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 PORP16435 677 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 DECR1Q16698 335 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 TSTQ16762 297 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 SLC25A44Q96H78 314 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF514Q96K75 400 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 NUDT9Q9BW91 350 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 MRPL17Q9NRX2 175 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 EXTL2Q9UBQ6 330 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 hCG_1807616A0A1W2PRN6 198 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 LRRC72A6NJI9 287 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 TRAF3IP2O43734 574 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 EVI2BP34910 448 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 Q1RN00 199 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 FAM174BQ3ZCQ3 159 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 ZNF610Q8N9Z0 462 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 KIAA1143Q96AT1 154 aaPredicted RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 AGXT2Q9BYV1 514 aa8.66□□□□□ -1.02
NIPBL-202ENST00000448238 PPIL3Q9H2H8 161 aaKnown RBP8.66□□□□□ -1.02
NIPBL-202ENST00000448238 FBRSQ9HAH7 460 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms