RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 GAL3ST4Q96RP7 486 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 HNRNPABQ99729 332 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CMKLR1Q99788 373 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SH3GL1Q99961 368 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 JPH2Q9BR39 696 aaPredicted RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 GTPBP2Q9BX10 602 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CACNG6Q9BXT2 260 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TRIM4Q9C037 500 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 DCLK3Q9C098 648 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 SLA2Q9H6Q3 261 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 MINDY3Q9H8M7 445 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PRMT8Q9NR22 394 aaPredicted RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 KLHL1Q9NR64 748 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 PXMP2Q9NR77 195 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 ZBTB40Q9NUA8 1239 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 ANO10Q9NW15 660 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TRNAU1APQ9NX07 287 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 CIDEBQ9UHD4 219 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 RALYQ9UKM9 306 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 MTF2Q9Y483 593 aaPredicted RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.84□□□□□ -1.792e-8■■□□□ 12.7
HMGB3-203ENST00000430118 FRYLO94915 3013 aa3.84□□□□□ -1.79
HMGB3-203ENST00000430118 TPRP12270 2363 aaKnown RBP3.84□□□□□ -1.79
HMGB3-203ENST00000430118 USP24Q9UPU5 2620 aa3.84□□□□□ -1.8
HMGB3-203ENST00000430118 TRAV24A0A0B4J272 114 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 LY6G6EA0A0G2JKS1 128 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RNF103-CHMP3A0A140T963 221 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SYCE3A1L190 88 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 FAM149AA5PLN7 773 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SLC9B1P1A6NJY1 282 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM110-MUSTN1A8MSY1 372 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 HIDE1A8MVS5 230 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 BECN2A8MW95 431 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RNF103O00237 685 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 GPAA1O43292 621 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RANBP6O60518 1105 aaKnown RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SHOX2O60902 331 aaPredicted RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ATP6V1G1O75348 118 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RAD51DO75771 328 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 WDPCPO95876 746 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 NUDT3O95989 172 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 H1F0P07305 194 aaKnown RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TOP1P11387 765 aaKnown RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TCF4P15884 667 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 VCLP18206 1134 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MPZP25189 248 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 CD27P26842 260 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 CD52P31358 61 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MMP13P45452 471 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 CDX1P47902 265 aaPredicted RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MMP15P51511 669 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF132P52740 706 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 CLDN15P56746 228 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 EGR4Q05215 589 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MGAT3Q09327 533 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF234Q14588 700 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 CALCRLQ16602 461 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 PRTGQ2VWP7 1150 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 AARDQ4LEZ3 155 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TOR1AIP1Q5JTV8 583 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 PXDC1Q5TGL8 231 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 PACS1Q6VY07 963 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF517Q6ZMY9 492 aaPredicted RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SLC24A5Q71RS6 500 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 KCTD9Q7L273 389 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 NRARPQ7Z6K4 114 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 LCA5Q86VQ0 697 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 FAM219AQ8IW50 185 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MAP7D3Q8IWC1 876 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 CNTN4Q8IWV2 1026 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 GPALPP1Q8IXQ4 340 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RNF113BQ8IZP6 322 aaKnown RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MRPL43Q8N983 215 aaKnown RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 UXS1Q8NBZ7 420 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ZBTB44Q8NCP5 570 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 OR52I2Q8NH67 350 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SLC44A1Q8WWI5 657 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SYN2Q92777 582 aaPredicted RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RIT1Q92963 219 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 ST6GALNAC6Q969X2 333 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SLC25A28Q96A46 364 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TBC1D31Q96DN5 1066 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 MTBPQ96DY7 904 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 OR1F2PQ96R84 312 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RUFY1Q96T51 708 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 NEURL2Q9BR09 285 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM117Q9H0C3 514 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 C1orf21Q9H246 121 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SEMA6AQ9H2E6 1030 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 BOLA2Q9H3K6 86 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 AZI2Q9H6S1 392 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 AKIRIN1Q9H9L7 192 aaPredicted RBP3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RNPEPL1Q9HAU8 725 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 PNPLA3Q9NST1 481 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 HIF1ANQ9NWT6 349 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 SPG21Q9NZD8 308 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 GGA2Q9UJY4 613 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 FBXW2Q9UKT8 454 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 TMCO1Q9UM00 188 aa3.83□□□□□ -1.8
HMGB3-203ENST00000430118 RABL2BQ9UNT1 228 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms