RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 SLC5A11Q8WWX8 675 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SYN2Q92777 582 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 FBXO17Q96EF6 278 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PTCD3Q96EY7 689 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 MPP4Q96JB8 637 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ERP44Q9BS26 406 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 RPP25Q9BUL9 199 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 FBXO9Q9UK97 447 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 AP3M1Q9Y2T2 418 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 LGI1O95970 557 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 POU2F1P14859 743 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 FMO1Q01740 532 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ID2Q02363 134 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SGCAQ16586 387 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ANKRD10Q9NXR5 420 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ADAM21Q9UKJ8 722 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PPP2R2CQ9Y2T4 447 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 NKX6-3A6NJ46 265 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ABCD4O14678 606 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CSF2P04141 144 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 HOXA11P31270 313 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 DYNC1I2Q13409 638 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF169Q14929 603 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SFT2D3Q587I9 215 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ALG1LQ6GMV1 187 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 JMJD6Q6NYC1 403 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 EPM2AIP1Q7L775 607 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ASCL5Q7RTU5 278 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 NRROSQ86YC3 692 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 OR14A16Q8NHC5 309 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 LRRC58Q96CX6 371 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 TM9SF2Q99805 663 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 GAL3ST1Q99999 423 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 UNKQ9C0B0 810 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 MS4A7Q9GZW8 240 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 NXF5Q9H1B4 397 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 VWA7Q9Y334 891 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PTPRQQ9UMZ3 2332 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 BLACEA4D250 179 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 BCKDKO14874 412 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PLOD3O60568 738 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 F7P08709 466 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SFTPDP35247 375 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ZFP36L2P47974 494 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 KHKP50053 298 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 RPL11P62913 178 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 IKZF1Q13422 519 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PLEKHN1Q494U1 663 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SLC23A3Q6PIS1 610 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 NEK10Q6ZWH5 1172 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CAMKMTQ7Z624 323 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PTGR2Q8N8N7 351 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 KAT5Q92993 513 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PIGTQ969N2 578 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 ZCCHC3Q9NUD5 404 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SNX10Q9Y5X0 201 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 C17orf105B2RV13 164 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PAPSS1O43252 624 aaPredicted RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 GDF9O60383 454 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 MTHFD1P11586 935 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 PCSK2P16519 638 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 KCNJ1P48048 391 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 TLE1Q04724 770 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 MAPK7Q13164 816 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 SSPNQ14714 243 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CDC73Q6P1J9 531 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CHERPQ8IWX8 916 aaKnown RBP8.06□□□□□ -1.12
HMGB1-203ENST00000341423 CAMK1GQ96NX5 476 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 GPR21Q99679 349 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 GRIP2Q9C0E4 1043 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 FAM192AQ9GZU8 254 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 TRPV5Q9NQA5 729 aa8.06□□□□□ -1.12
HMGB1-203ENST00000341423 A0A0G2JND7 137 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 A0A1W2PQ09 198 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 OR52A4PA6NMU1 304 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 SULT2B1O00204 365 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 HSPA12AO43301 675 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 NUDT21O43809 227 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 KRT8P05787 483 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 IFNGR1P15260 489 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 ZNF43P17038 809 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 NXPH1P58417 271 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 RPS13P62277 151 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 COL9A2Q14055 689 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 MRPL41Q8IXM3 137 aaKnown RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PIK3C3Q8NEB9 887 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PMM1Q92871 262 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 P2RY11Q96G91 374 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 SLC35G5Q96KT7 338 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 PSMC3IPQ9P2W1 217 aaPredicted RBP8.05□□□□□ -1.12
HMGB1-203ENST00000341423 CDH22Q9UJ99 828 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 LNP1A1A4G5 178 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 TRIM49D1C9J1S8 452 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 D6RAR5 112 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 SLCO1B7G3V0H7 640 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 ERVH48-1M5A8F1 160 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 ANKRD28O15084 1053 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 TFEBP19484 476 aa8.05□□□□□ -1.12
HMGB1-203ENST00000341423 KCNC1P48547 511 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms