RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 AQP6Q13520 282 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 SPCS2Q15005 226 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 C9orf50Q5SZB4 431 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 GCNT6Q5T4J0 391 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 C17orf64Q86WR6 236 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 CCDC71Q8IV32 467 aaPredicted RBP9.9□□□□□ -0.83
LIMA1-201ENST00000341247 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.9□□□□□ -0.83
LIMA1-201ENST00000341247 LRRC56Q8IYG6 542 aaPredicted RBP9.9□□□□□ -0.83
LIMA1-201ENST00000341247 NLGN4XQ8N0W4 816 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 OR9Q2Q8NGE9 314 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 UTP15Q8TED0 518 aaKnown RBP9.9□□□□□ -0.83
LIMA1-201ENST00000341247 STARD8Q92502 1023 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 TAMM41Q96BW9 452 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 C7orf34Q96L11 122 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 ITM2CQ9NQX7 267 aa9.9□□□□□ -0.83
LIMA1-201ENST00000341247 MUC22E2RYF6 1773 aaPredicted RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 GLOD5A6NK44 160 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 FAM227AF5H4B4 570 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 RNASET2O00584 256 aaKnown RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 PI15O43692 258 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 PRKRAO75569 313 aaKnown RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 SEC14L2O76054 403 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 ALPPL2P10696 532 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TTKP33981 857 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 PBX2P40425 430 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 RANBP1P43487 201 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 MVDP53602 400 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 CDK3Q00526 305 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 UAP1L1Q3KQV9 507 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 EZH1Q92800 747 aaPredicted RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 GTPBP3Q969Y2 492 aaKnown RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 FAM83CQ9BQN1 747 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 DOHHQ9BU89 302 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 PLA2G2FQ9BZM2 168 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM245Q9H330 911 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 ETAA1Q9NY74 926 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 SELENONQ9NZV5 590 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 WDR37Q9Y2I8 494 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 KLHL20Q9Y2M5 609 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 PLXND1Q9Y4D7 1925 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 A0A0J9YVX5 310 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TMEM229AB2RXF0 380 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 C1QTNF3-AMACRE9PGA6 284 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 SLC16A6O15403 523 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 OR1F1O43749 312 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 UGT2B11O75310 529 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 KAT7O95251 611 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 MT-ND2P03891 347 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 GJA4P35212 333 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TGFBR1P36897 503 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 OPRD1P41143 372 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 RPS6KA3P51812 740 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 MLLT10P55197 1068 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 GP2P55259 537 aaKnown RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 CDK6Q00534 326 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 RFX4Q33E94 735 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 PNCKQ6P2M8 343 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 GALNT18Q6P9A2 607 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 GPR155Q7Z3F1 870 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TSEN54Q7Z6J9 526 aaKnown RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 HDDC3Q8N4P3 179 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 SLC5A8Q8N695 610 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 AMER3Q8N944 861 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 ANKRD53Q8N9V6 530 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 FERD3LQ96RJ6 166 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 RPP25Q9BUL9 199 aaKnown RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 CHST8Q9H2A9 424 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 ATAD3AQ9NVI7 634 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 NDUFAF4Q9P032 175 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 OR52A4PA6NMU1 304 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 PLPP1O14494 284 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 NDUFS2O75306 463 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TPP2P29144 1249 aaPredicted RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TIE1P35590 1138 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 LBX1P52954 281 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 MAPK12P53778 367 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 ITGA1P56199 1179 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 NPRL3Q12980 569 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 CYP2A13Q16696 494 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 ZNF420Q8TAQ5 688 aaPredicted RBP9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TBC1D15Q8TC07 691 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 SLAMF7Q9NQ25 335 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 GALNT8Q9NY28 637 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TAS2R9Q9NYW1 312 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 TAAR2Q9P1P5 351 aa9.89□□□□□ -0.83
LIMA1-201ENST00000341247 CKAP5Q14008 2032 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 PRAMEF25A6NGN4 478 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 PCDHGA12O60330 932 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 GPR37L1O60883 481 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 C9P02748 559 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 RB1P06400 928 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 POU1F1P28069 291 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 KRT20P35900 424 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 MANFP55145 182 aaKnown RBP9.88□□□□□ -0.83
LIMA1-201ENST00000341247 SELENOWP63302 87 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 VEZF1Q14119 521 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 PDGFRLQ15198 375 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 EXOC3L2Q2M3D2 409 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 PIP5KL1Q5T9C9 394 aa9.88□□□□□ -0.83
LIMA1-201ENST00000341247 GTF2IRD2BQ6EKJ0 949 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms