RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NCBP2P52298 156 aaKnown RBP eCLIP6.59□□□□□ -1.353e-13■■□□□ 12.1
SF3B1-201ENST00000335508 ERVPABLB-1P60509 514 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TRAF3Q13114 568 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MYBPC3Q14896 1274 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 BROXQ5VW32 411 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 WASH2PQ6VEQ5 465 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 THAP5Q7Z6K1 395 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 DEFB123Q8N688 67 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CANT1Q8WVQ1 401 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 WDR60Q8WVS4 1066 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 SLC7A6OSQ96CW6 309 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 BIRC8Q96P09 236 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TAPBPLQ9BX59 468 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 EVA1AQ9H8M9 152 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 WASH6PQ9NQA3 447 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CIDEBQ9UHD4 219 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 PPT2Q9UMR5 302 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 EMC8O43402 210 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 THRBP10828 461 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MTHFD2P13995 350 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 HOXD12P35452 270 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MLLT3P42568 568 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 AGTR2P50052 363 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CLCN7P51798 805 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 LASP1Q14847 261 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 OR4D1Q15615 310 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 FAM109BQ6ICB4 259 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 C12orf40Q86WS4 652 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CBR4Q8N4T8 237 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CDRT4Q8N9R6 151 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 PIGXQ8TBF5 258 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TEX47Q8TBZ9 253 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TESCQ96BS2 214 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 REXO5Q96IC2 774 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 EPYCQ99645 322 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 VN1R3Q9BXE9 311 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 C1GALT1Q9NS00 363 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 GSTK1Q9Y2Q3 226 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 COQ6Q9Y2Z9 468 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 IFT52Q9Y366 437 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 OR1A2Q9Y585 309 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 ABCA1O95477 2261 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 FOXE1O00358 373 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MYL12BO14950 172 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 JMJD7P0C870 316 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CTSKP43235 329 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 TPMTP51580 245 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 ST3GAL3Q11203 375 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 KHDC1Q4VXA5 237 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 NANOGP8Q6NSW7 305 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF683Q8IZ20 524 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 IL17RCQ8NAC3 791 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 BBS10Q8TAM1 723 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 RLN3Q8WXF3 142 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 C5orf34Q96MH7 638 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 NSUN5Q96P11 429 aaKnown RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 EBPLQ9BY08 206 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 NT5DC2Q9H857 520 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 NANOGQ9H9S0 305 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 NECTIN3Q9NQS3 549 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 CPNE7Q9UBL6 633 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 PADI2Q9Y2J8 665 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.59□□□□□ -1.35
SF3B1-201ENST00000335508 MAP4K5Q9Y4K4 846 aa6.59□□□□□ -1.35
SF3B1-201ENST00000335508 SCN1AP35498 2009 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 A0A0G2JN53 185 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 AGAP14A8MT82 685 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 C9JVG2 144 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 TBX10O75333 385 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 ZBTB11O95625 1053 aaPredicted RBP6.59□□□□□ -1.36
SF3B1-201ENST00000335508 ARNTP27540 789 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 PTSQ03393 145 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 DAG1Q14118 895 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 SYT13Q7L8C5 426 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 IQCHQ86VS3 1027 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF527Q8NB42 609 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 SLC35A5Q9BS91 424 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 P2RY12Q9H244 342 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 EQTNQ9NQ60 294 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 SDHAF3Q9NRP4 125 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 CLN6Q9NWW5 311 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 PRKAB1Q9Y478 270 aa6.59□□□□□ -1.36
SF3B1-201ENST00000335508 LINC00854A0A1B0GVQ3 168 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 HTR3EA5X5Y0 456 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PLK4O00444 970 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PROM1O43490 865 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 NOBOXO60393 691 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 UGT2B11O75310 529 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 PRKD3O94806 890 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CPNE6O95741 557 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 RETP07949 1114 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 HIST1H1TP22492 207 aaPredicted RBP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 TRIM23P36406 574 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 MTPNP58546 118 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 MANEAQ5SRI9 462 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 METRNLQ641Q3 311 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 CEACAM20Q6UY09 585 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 LARP4Q71RC2 724 aaKnown RBP eCLIP6.58□□□□□ -1.36
SF3B1-201ENST00000335508 FAM47BQ8NA70 645 aa6.58□□□□□ -1.36
SF3B1-201ENST00000335508 ZNF483Q8TF39 744 aaPredicted RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms