RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ADAM10O14672 748 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 GMPRP36959 345 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 DECR1Q16698 335 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 TSPYL5Q86VY4 417 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 LGALS12Q96DT0 336 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 ZDHHC18Q9NUE0 388 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 SCN11AQ9UI33 1791 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 S100A7P31151 101 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 PITPNBP48739 271 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 RPP30P78346 268 aaKnown RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 TOR1AIP1Q5JTV8 583 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 XKR5Q6UX68 686 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 VTCN1Q7Z7D3 282 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 SERPINA9Q86WD7 417 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 OR10T2Q8NGX3 314 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 CCDC120Q96HB5 630 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 SPIN2AQ99865 258 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 SPIN2BQ9BPZ2 258 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 ABCB8Q9NUT2 735 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 PCDHGA2Q9Y5H1 932 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 DIRAS3O95661 229 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 ALDH3B1P43353 468 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 MLLT1Q03111 559 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 NOMO2Q5JPE7 1267 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 MBLAC2Q68D91 279 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 MTFR2Q6P444 385 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 STK35Q8TDR2 534 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 PKP2Q99959 881 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 SLC2A11Q9BYW1 496 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 C2CD4BA6NLJ0 364 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 CDK1P06493 297 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 FECHP22830 423 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF792Q3KQV3 632 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 NOXA1Q86UR1 476 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 TMEM41AQ96HV5 264 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 LRRC72A6NJI9 287 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 ANKRD63C9JTQ0 380 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 GMDSO60547 372 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 OR4F21O95013 312 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 CASP9P55211 416 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 KCNJ11Q14654 390 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 AARDQ4LEZ3 155 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 C12orf29Q8N999 325 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 OR8J1Q8NGP2 316 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 CCM2LQ9NUG4 571 aaPredicted RBP13.82□□□□□ -0.2
COL7A1-201ENST00000328333 EXTL2Q9UBQ6 330 aa13.82□□□□□ -0.2
COL7A1-201ENST00000328333 PRSS51A0A1B0GVH4 220 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 LGR5O75473 907 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CDK14O94921 469 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CHATP28329 748 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 EIF2DP41214 584 aaKnown RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ACTR1BP42025 376 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF280BQ86YH2 543 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF382Q96SR6 550 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CNN2Q99439 309 aaKnown RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 GLTPQ9NZD2 209 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 FBXW2Q9UKT8 454 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 MRPS23Q9Y3D9 190 aaKnown RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 PCDHB3Q9Y5E6 796 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 A0A1W2PPW3 197 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CKMT2P17540 419 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CASRP41180 1078 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 IDH3GP51553 393 aaPredicted RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CDK6Q00534 326 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 NPAS3Q8IXF0 933 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CCDC71LQ8N9Z2 235 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 MFSD3Q96ES6 412 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 PDGFDQ9GZP0 370 aaPredicted RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ABCG8Q9H221 673 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ICKQ9UPZ9 632 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 C2orf92A0A1B0GVN3 265 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CD97P48960 835 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 MC2RQ01718 297 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 KCNIP4Q6PIL6 250 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 NAPRTQ6XQN6 538 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 TSSK6Q9BXA6 273 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CNTNAP1P78357 1384 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 SMIM35A0A1B0GVV1 85 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 NMBRP28336 390 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 HOXD12P35452 270 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 EIF4HQ15056 248 aaKnown RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF226Q9NYT6 803 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 LIPT1Q9Y234 373 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 SCN4AP35499 1836 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 UPK1BO75841 260 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 SFTPBP07988 381 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 AMZ2Q86W34 360 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ACDQ96AP0 544 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 BIRC7Q96CA5 298 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ZBTB45Q96K62 511 aaPredicted RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ZCCHC3Q9NUD5 404 aaKnown RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 NUP188Q5SRE5 1749 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 SLC22A31A6NKX4 558 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 ZNF487B1APH4 448 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 DLDP09622 509 aaKnown RBP13.81□□□□□ -0.2
COL7A1-201ENST00000328333 CAPSQ13938 189 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 LIPKQ5VXJ0 399 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 GPR22Q99680 433 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 RFPL3O75679 317 aa13.81□□□□□ -0.2
COL7A1-201ENST00000328333 NFATC1O95644 943 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms