RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CEP97Q8IW35 865 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 KCT2Q8NC54 265 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 M1APQ8TC57 530 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 ANKRD49Q8WVL7 239 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 OR4K3Q96R72 315 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 EPB41L4BQ9H329 900 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 CDC42EP4Q9H3Q1 356 aaKnown RBP17.84■□□□□ 0.45
CDX1-202ENST00000616154 RUBCNLQ9H714 662 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 KCNK13Q9HB14 408 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 NINJ2Q9NZG7 142 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 SLC22A7Q9Y694 548 aa17.84■□□□□ 0.45
CDX1-202ENST00000616154 NCOA6Q14686 2063 aaPredicted RBP17.84■□□□□ 0.45
CDX1-202ENST00000616154 UQCRHLA0A096LP55 91 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 FEZF1A0PJY2 475 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 OR2W5A6NFC9 320 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 CCL21O00585 134 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 RDH16O75452 317 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 IL10P22301 178 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 GRNP28799 593 aaKnown RBP17.83■□□□□ 0.44
CDX1-202ENST00000616154 GRK3P35626 688 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 GP5P40197 560 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 SRSF11Q05519 484 aaKnown RBP17.83■□□□□ 0.44
CDX1-202ENST00000616154 ZNF460Q14592 562 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 ZKSCAN8Q15776 578 aaPredicted RBP17.83■□□□□ 0.44
CDX1-202ENST00000616154 MEP1AQ16819 746 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 FCRLBQ6BAA4 426 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 RPTNQ6XPR3 784 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 C3orf62Q6ZUJ4 267 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 MRGPRGQ86SM5 289 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 ADAMTSL2Q86TH1 951 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 MCEMP1Q8IX19 187 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 KLHDC8AQ8IYD2 350 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 ZNF808Q8N4W9 903 aaPredicted RBP17.83■□□□□ 0.44
CDX1-202ENST00000616154 MFSD9Q8NBP5 474 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 MDS2Q8NDY4 140 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 PLPP5Q8NEB5 264 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 SLC13A3Q8WWT9 602 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 RBBP8Q99708 897 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 DERL2Q9GZP9 239 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 MMP25Q9NPA2 562 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 OARD1Q9Y530 152 aa17.83■□□□□ 0.44
CDX1-202ENST00000616154 OTOGQ6ZRI0 2925 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 CDC7O00311 574 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 LCMT2O60294 686 aaKnown RBP17.82■□□□□ 0.44
CDX1-202ENST00000616154 PIAS1O75925 651 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 SLC35G6P0C7Q6 338 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 CDH1P12830 882 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 RHAGQ02094 409 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 TUBA3CQ13748 450 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 BEND6Q5SZJ8 279 aaPredicted RBP17.82■□□□□ 0.44
CDX1-202ENST00000616154 TUBA3EQ6PEY2 450 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 PAPD4Q6PIY7 484 aaKnown RBP17.82■□□□□ 0.44
CDX1-202ENST00000616154 CAPN12Q6ZSI9 719 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 CRLF3Q8IUI8 442 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 OR1F2PQ96R84 312 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 NPAS2Q99743 824 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 GPAMQ9HCL2 828 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 LANCL2Q9NS86 450 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 MTO1Q9Y2Z2 717 aaKnown RBP17.82■□□□□ 0.44
CDX1-202ENST00000616154 NAALAD2Q9Y3Q0 740 aa17.82■□□□□ 0.44
CDX1-202ENST00000616154 TEP1Q99973 2627 aaKnown RBP17.82■□□□□ 0.44
CDX1-202ENST00000616154 FBN2P35556 2912 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 PABPN1LA6NDY0 278 aaKnown RBP17.81■□□□□ 0.44
CDX1-202ENST00000616154 MAGEB17A8MXT2 336 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 ERLIN1O75477 346 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 ABHD2P08910 425 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 HNMTP50135 292 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 CCR8P51685 355 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 NAB1Q13506 487 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 SFT2D3Q587I9 215 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 UBAP2Q5T6F2 1119 aaKnown RBP17.81■□□□□ 0.44
CDX1-202ENST00000616154 BNC2Q6ZN30 1099 aaPredicted RBP17.81■□□□□ 0.44
CDX1-202ENST00000616154 AFAP1L2Q8N4X5 818 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 ALKBH8Q96BT7 664 aaKnown RBP17.81■□□□□ 0.44
CDX1-202ENST00000616154 PYCR2Q96C36 320 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 MOCOSQ96EN8 888 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 TSPAN17Q96FV3 270 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 SCMH1Q96GD3 660 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 SIGLEC12Q96PQ1 595 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 LPAR4Q99677 370 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 UTP23Q9BRU9 249 aaKnown RBP17.81■□□□□ 0.44
CDX1-202ENST00000616154 GTF3C1Q12789 2109 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 CACNA1CQ13936 2221 aa17.81■□□□□ 0.44
CDX1-202ENST00000616154 TRBC2A0A5B9 178 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 ASPDHA6ND91 283 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 NPEPPSL1A6NEC2 478 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 RIPK2O43353 540 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 SLC19A2O60779 497 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 SAT1P21673 171 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 STX2P32856 288 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 CD96P40200 585 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 CASP6P55212 293 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 USP10Q14694 798 aaKnown RBP17.8■□□□□ 0.44
CDX1-202ENST00000616154 ABRAXAS2Q15018 415 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 HERC3Q15034 1050 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 OR1C1Q15619 314 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 TSNQ15631 228 aaKnown RBP17.8■□□□□ 0.44
CDX1-202ENST00000616154 NSDHLQ15738 373 aa17.8■□□□□ 0.44
CDX1-202ENST00000616154 UAP1Q16222 522 aaPredicted RBP17.8■□□□□ 0.44
CDX1-202ENST00000616154 CDKL4Q5MAI5 379 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms