RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TMPRSS11DO60235 418 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 SORBS2O94875 1100 aaKnown RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 B3GALT4O96024 378 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 PIM1P11309 404 aaPredicted RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 CDH3P22223 829 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CCT8P50990 548 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 PLA2G16P53816 162 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 TAS2R50P59544 299 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 ARF3P61204 181 aaPredicted RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 ELF3P78545 371 aaPredicted RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 PDE7AQ13946 482 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CCDC6Q16204 474 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 TOR1AIP1Q5JTV8 583 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 NUDT13Q86X67 352 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 SCUBE1Q8IWY4 988 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 MINDY1Q8N5J2 469 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 EFCAB3Q8N7B9 438 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 C19orf47Q8N9M1 422 aaKnown RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 FAM181AQ8N9Y4 354 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 OR8J2Q8NGG1 315 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CDRT15Q96T59 188 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CENPKQ9BS16 269 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CROTQ9UKG9 612 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 PRPF19Q9UMS4 504 aaKnown RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 R4GN57 208 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 A0A0G2JN53 185 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 A8MUI8 341 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 ERI3O43414 337 aaKnown RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 CER1O95813 267 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 SMIM10L1P0DMW3 83 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 MPLP40238 635 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 MTTPP55157 894 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 MC1RQ01726 317 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 DPY19L1Q2PZI1 675 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 TRMT5Q32P41 509 aaKnown RBP13.58□□□□□ -0.24
USP39-220ENST00000613444 PIGGQ5H8A4 983 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CCNYL2Q5T2Q4 361 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 ANKRD26P1Q6NSI1 321 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 FAM92BQ6ZTR7 304 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 PAGE2Q7Z2X7 111 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 KIAA2013Q8IYS2 634 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 CDC26Q8NHZ8 85 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 TM4SF18Q96CE8 201 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 COQ8BQ96D53 544 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 SMIM10Q96HG1 83 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 OR52E6Q96RD3 313 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 ARRDC1-AS1Q9H2J1 176 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 IL1RL2Q9HB29 575 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 ATP6V1HQ9UI12 483 aa13.58□□□□□ -0.24
USP39-220ENST00000613444 RASSF9O75901 435 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 FURINP09958 794 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 LAMP1P11279 417 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 HOXB9P17482 250 aaPredicted RBP13.57□□□□□ -0.24
USP39-220ENST00000613444 SLC6A2P23975 617 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 CD1CP29017 333 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 S100A3P33764 101 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 SRSF11Q05519 484 aaKnown RBP13.57□□□□□ -0.24
USP39-220ENST00000613444 NFYCQ13952 458 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 CEACAM7Q14002 265 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 CAPRIN1Q14444 709 aaKnown RBP13.57□□□□□ -0.24
USP39-220ENST00000613444 ZNF385BQ569K4 471 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 OR4F3Q6IEY1 312 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 BNC2Q6ZN30 1099 aaPredicted RBP13.57□□□□□ -0.24
USP39-220ENST00000613444 IKBIPQ70UQ0 350 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 MMP21Q8N119 569 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 ARHGAP24Q8N264 748 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 DNAJC22Q8N4W6 341 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 NCSTNQ92542 709 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 TGM7Q96PF1 710 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 KCNC2Q96PR1 638 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 HOPXQ9BPY8 73 aaPredicted RBP13.57□□□□□ -0.24
USP39-220ENST00000613444 EPB41L1Q9H4G0 881 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 REEP4Q9H6H4 257 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 GID8Q9NWU2 228 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 TMEM181Q9P2C4 612 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 ABCD2Q9UBJ2 740 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 PACSIN3Q9UKS6 424 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 ERVK-11Q9UQG0 969 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 MAN2B2Q9Y2E5 1009 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 ADAMTS20P59510 1910 aa13.57□□□□□ -0.24
USP39-220ENST00000613444 IGHV5-51A0A0C4DH38 117 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 TLCD2A6NGC4 264 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 PCDHGA12O60330 932 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 PDE5AO76074 875 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 SCELO95171 688 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 NPPAP01160 153 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 C9P02748 559 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 CTSBP07858 339 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 SYPP08247 313 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 IL3P08700 152 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 SLC35G6P0C7Q6 338 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 ALPPL2P10696 532 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 COX7A2P14406 83 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 PNLIPP16233 465 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 HIST1H1TP22492 207 aaPredicted RBP13.56□□□□□ -0.24
USP39-220ENST00000613444 PTPN6P29350 595 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 CSF2RBP32927 897 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 KIR3DL1P43629 444 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 GABRA4P48169 554 aa13.56□□□□□ -0.24
USP39-220ENST00000613444 MAPK12P53778 367 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms