RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ECT2LQ008S8 904 aa4□□□□□ -1.77
LIG3-211ENST00000588713 IFITM2Q01629 132 aa4□□□□□ -1.77
LIG3-211ENST00000588713 POU4F1Q01851 419 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CHRNEQ04844 493 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ZFP36L1Q07352 338 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 CD300CQ08708 224 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CDH17Q12864 832 aa4□□□□□ -1.77
LIG3-211ENST00000588713 FADDQ13158 208 aa4□□□□□ -1.77
LIG3-211ENST00000588713 C1orf61Q13536 156 aa4□□□□□ -1.77
LIG3-211ENST00000588713 RCAN2Q14206 197 aa4□□□□□ -1.77
LIG3-211ENST00000588713 TCEA2Q15560 299 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CST6Q15828 149 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CTF1Q16619 201 aa4□□□□□ -1.77
LIG3-211ENST00000588713 HIST2H2ACQ16777 129 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 CYP51A1Q16850 503 aa4□□□□□ -1.77
LIG3-211ENST00000588713 RFX4Q33E94 735 aa4□□□□□ -1.77
LIG3-211ENST00000588713 PDLIM3Q53GG5 364 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 SETMARQ53H47 684 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 PRRT3Q5FWE3 981 aa4□□□□□ -1.77
LIG3-211ENST00000588713 FAM209AQ5JX71 171 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CCNJQ5T5M9 372 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ZNF468Q5VIY5 522 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 TMEM215Q68D42 235 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ARHGAP17Q68EM7 881 aa4□□□□□ -1.77
LIG3-211ENST00000588713 KIAA0930Q6ICG6 404 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 ESRP1Q6NXG1 681 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 ERAP2Q6P179 960 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SCYL2Q6P3W7 929 aa4□□□□□ -1.77
LIG3-211ENST00000588713 BHLHB9Q6PI77 547 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CNSTQ6PJW8 725 aa4□□□□□ -1.77
LIG3-211ENST00000588713 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 LARP4Q71RC2 724 aaKnown RBP eCLIP4□□□□□ -1.77
LIG3-211ENST00000588713 ADCK1Q86TW2 530 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CUZD1Q86UP6 607 aa4□□□□□ -1.77
LIG3-211ENST00000588713 P2RY8Q86VZ1 359 aa4□□□□□ -1.77
LIG3-211ENST00000588713 DCP2Q8IU60 420 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 GALNT13Q8IUC8 556 aa4□□□□□ -1.77
LIG3-211ENST00000588713 PEX5LQ8IYB4 626 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SLC22A18ASQ8N1D0 253 aa4□□□□□ -1.77
LIG3-211ENST00000588713 MIER2Q8N344 545 aa4□□□□□ -1.77
LIG3-211ENST00000588713 RBMXL3Q8N7X1 1067 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 C1orf127Q8N9H9 656 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SETD9Q8NE22 299 aa4□□□□□ -1.77
LIG3-211ENST00000588713 PDZD8Q8NEN9 1154 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ZNF555Q8NEP9 628 aa4□□□□□ -1.77
LIG3-211ENST00000588713 PPHLN1Q8NEY8 458 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 BPIFB6Q8NFQ5 453 aa4□□□□□ -1.77
LIG3-211ENST00000588713 OR7G1Q8NGA0 311 aa4□□□□□ -1.77
LIG3-211ENST00000588713 OR52K1Q8NGK4 314 aa4□□□□□ -1.77
LIG3-211ENST00000588713 GRPEL2Q8TAA5 225 aa4□□□□□ -1.77
LIG3-211ENST00000588713 DYNC2LI1Q8TCX1 351 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ZFP90Q8TF47 636 aa4□□□□□ -1.77
LIG3-211ENST00000588713 RNF139Q8WU17 664 aa4□□□□□ -1.77
LIG3-211ENST00000588713 FBLIM1Q8WUP2 373 aa4□□□□□ -1.77
LIG3-211ENST00000588713 TP53INP1Q96A56 240 aa4□□□□□ -1.77
LIG3-211ENST00000588713 NTAN1Q96AB6 310 aa4□□□□□ -1.77
LIG3-211ENST00000588713 TMEM125Q96AQ2 219 aa4□□□□□ -1.77
LIG3-211ENST00000588713 YIPF6Q96EC8 236 aa4□□□□□ -1.77
LIG3-211ENST00000588713 MFSD3Q96ES6 412 aa4□□□□□ -1.77
LIG3-211ENST00000588713 TSPAN17Q96FV3 270 aa4□□□□□ -1.77
LIG3-211ENST00000588713 REXO5Q96IC2 774 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 PIWIL1Q96J94 861 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 PPP1R36Q96LQ0 422 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CCDC115Q96NT0 180 aa4□□□□□ -1.77
LIG3-211ENST00000588713 DACH2Q96NX9 599 aa4□□□□□ -1.77
LIG3-211ENST00000588713 GPR78Q96P69 363 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SNX18Q96RF0 628 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CSF3RQ99062 836 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SLC30A3Q99726 388 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SH3GL1Q99961 368 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ARPC5LQ9BPX5 153 aa4□□□□□ -1.77
LIG3-211ENST00000588713 KCTD14Q9BQ13 255 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 KIFC1Q9BW19 673 aa4□□□□□ -1.77
LIG3-211ENST00000588713 BOCQ9BWV1 1114 aa4□□□□□ -1.77
LIG3-211ENST00000588713 BTBD2Q9BX70 525 aa4□□□□□ -1.77
LIG3-211ENST00000588713 NT5C1AQ9BXI3 368 aa4□□□□□ -1.77
LIG3-211ENST00000588713 TWSG1Q9GZX9 223 aa4□□□□□ -1.77
LIG3-211ENST00000588713 GABARAPL1Q9H0R8 117 aa4□□□□□ -1.77
LIG3-211ENST00000588713 GSTO2Q9H4Y5 243 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CCSER2Q9H7U1 834 aa4□□□□□ -1.77
LIG3-211ENST00000588713 FBRSQ9HAH7 460 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CCNB1IP1Q9NPC3 277 aa4□□□□□ -1.77
LIG3-211ENST00000588713 DIABLOQ9NR28 239 aa4□□□□□ -1.77
LIG3-211ENST00000588713 IARS2Q9NSE4 1012 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4□□□□□ -1.77
LIG3-211ENST00000588713 CCDC59Q9P031 241 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 CRNNQ9UBG3 495 aaPredicted RBP4□□□□□ -1.77
LIG3-211ENST00000588713 WARS2Q9UGM6 360 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 SIX4Q9UIU6 781 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ZNF229Q9UJW7 825 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ZNF221Q9UK13 617 aa4□□□□□ -1.77
LIG3-211ENST00000588713 LSM7Q9UK45 103 aaKnown RBP4□□□□□ -1.77
LIG3-211ENST00000588713 SLC39A10Q9ULF5 831 aa4□□□□□ -1.77
LIG3-211ENST00000588713 FZD10Q9ULW2 581 aa4□□□□□ -1.77
LIG3-211ENST00000588713 CLEC4EQ9ULY5 219 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SCML1Q9UN30 329 aa4□□□□□ -1.77
LIG3-211ENST00000588713 ERVW-1Q9UQF0 538 aa4□□□□□ -1.77
LIG3-211ENST00000588713 PDE10AQ9Y233 779 aa4□□□□□ -1.77
LIG3-211ENST00000588713 TNFSF13BQ9Y275 285 aa4□□□□□ -1.77
LIG3-211ENST00000588713 SLC27A6Q9Y2P4 619 aa4□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms