RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 OR56B2PQ8NGI1 322 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 OR56B1Q8NGI3 324 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 OR2T34Q8NGX1 318 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 HMGCLL1Q8TB92 370 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 Q8TCH9 128 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 SLC9A6Q92581 669 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 SEPT8Q92599 483 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 CAVIN3Q969G5 261 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 TMEM18Q96B42 140 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 LINGO1Q96FE5 620 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 CFAP36Q96G28 342 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 TTC25Q96NG3 672 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 QRFPRQ96P65 431 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ADOQ96SZ5 270 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 ZNF416Q9BWM5 594 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 EGLN1Q9GZT9 426 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 TMEM117Q9H0C3 514 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 CDH20Q9HBT6 801 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 MMP25Q9NPA2 562 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 TCP11L1Q9NUJ3 509 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 PTGFRNQ9P2B2 879 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 NAALAD2Q9Y3Q0 740 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 UBE4BO95155 1302 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 C2orf16Q68DN1 1984 aa5.46□□□□□ -1.54
VPS53-219ENST00000576019 APCP25054 2843 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 PRSS51A0A1B0GVH4 220 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CTAGE15A4D2H0 777 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 TRABD2BA6NFA1 517 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ANKDD1BA6NHY2 528 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 B4DGG1 531 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 H7C1Q1 480 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 PPEF2O14830 753 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 LANCL1O43813 399 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ATP6V1G1O75348 118 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 PAPSS2O95340 614 aaPredicted RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 GSRP00390 522 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CTAGE8P0CG41 777 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 EPB41P11171 864 aaKnown RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 GZMAP12544 262 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CD58P19256 250 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CYP2F1P24903 491 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 TAGLN2P37802 199 aaKnown RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 APOBEC1P41238 236 aaKnown RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 CNN1P51911 297 aaKnown RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 CSNK2A1P68400 391 aaPredicted RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 HOXA4Q00056 320 aaPredicted RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 SNX1Q13596 522 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 TSTA3Q13630 321 aaPredicted RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 IMMTQ16891 758 aaKnown RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 CCDC142Q17RM4 750 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 DCST1Q5T197 706 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CCNYL2Q5T2Q4 361 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 FAM46CQ5VWP2 391 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 PLPP4Q5VZY2 271 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 WBP2NLQ6ICG8 309 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 LCN10Q6JVE6 187 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 DUS1LQ6P1R4 473 aaKnown RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 CES3Q6UWW8 571 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ARSKQ6UWY0 536 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 B3GNT6Q6ZMB0 384 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CTAGE6Q86UF2 777 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 VASH2Q86V25 355 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 TMEM126BQ8IUX1 230 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ARHGEF19Q8IW93 802 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CTAGE4Q8IX94 777 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 CSNK2A3Q8NEV1 391 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 SPATA3Q8NHX4 192 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ESAMQ96AP7 390 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 RHBDF1Q96CC6 855 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ZNF503Q96F45 646 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ZNF582Q96NG8 517 aaPredicted RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 SLC22A12Q96S37 553 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 HAUS8Q9BT25 410 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 FAM234AQ9H0X4 552 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 TFB2MQ9H5Q4 396 aaKnown RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 Q9N2K0 584 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 KLHL13Q9P2N7 655 aa5.45□□□□□ -1.54
VPS53-219ENST00000576019 ARPP21Q9UBL0 812 aaPredicted RBP5.45□□□□□ -1.54
VPS53-219ENST00000576019 DLG5Q8TDM6 1919 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 MYH15Q9Y2K3 1946 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CACNA1FO60840 1977 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 A0A0B4J203 849 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 ILVBLA1L0T0 632 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 PATE3B3GLJ2 98 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 ANHXE9PGG2 379 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 MAGEB3O15480 346 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 PAX4O43316 350 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 THRBP10828 461 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CYP2A7P20853 494 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CCNCP24863 283 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 ACRV1P26436 265 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 PRDX6P30041 224 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 HSD17B3P37058 310 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 MMP13P45452 471 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 IER3P46695 156 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CXCL12P48061 93 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 SLC6A12P48065 614 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 CACNA2D1P54289 1103 aa5.44□□□□□ -1.54
VPS53-219ENST00000576019 SH3BGRP55822 239 aaPredicted RBP5.44□□□□□ -1.54
VPS53-219ENST00000576019 UBE2HP62256 183 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 126.6 ms