RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 GTF2H3Q13889 308 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 LARS2Q15031 903 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 KDM4DQ6B0I6 523 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 ANKRD54Q6NXT1 300 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 SHQ1Q6PI26 577 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 Q6ZPB1 254 aaPredicted RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 ISCA2Q86U28 154 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 CILP2Q8IUL8 1156 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 PLPP6Q8IY26 295 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 ZNF548Q8NEK5 533 aaPredicted RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 EXOC2Q96KP1 924 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 HYLS1Q96M11 299 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 OPALINQ96PE5 141 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 SEC22CQ9BRL7 303 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 WACQ9BTA9 647 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 MTIF3Q9H2K0 278 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 GALNT9Q9HCQ5 603 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 IL1RAPQ9NPH3 570 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 VAPAQ9P0L0 249 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 MARCH4Q9P2E8 410 aaPredicted RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 FAM8A1Q9UBU6 413 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 AFF4Q9UHB7 1163 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 VPS9D1Q9Y2B5 631 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 ARL5AQ9Y689 179 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 H3BM21 787 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 FABP7O15540 132 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 LDB2O43679 373 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 PTP4A3O75365 173 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 STC2O76061 302 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 VIPP01282 170 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 STSP08842 583 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 HOXB1P14653 301 aaPredicted RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 RPP38P78345 283 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 MRPL28Q13084 256 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 PTPRCAPQ14761 206 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 KIAA1614Q5VZ46 1190 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 ADGRG3Q86Y34 549 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 P3H2Q8IVL5 708 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 FAM217AQ8IXS0 508 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 RYBPQ8N488 228 aaPredicted RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 ZNF461Q8TAF7 563 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 KLHL6Q8WZ60 621 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 LINC00052Q96N35 136 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 CCDC115Q96NT0 180 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 RAD9AQ99638 391 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 THUMPD3Q9BV44 507 aaKnown RBP12.8□□□□□ -0.36
CLK3-206ENST00000562078 MAGEH1Q9H213 219 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 GPR83Q9NYM4 423 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 ERVW-1Q9UQF0 538 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 YIPF1Q9Y548 306 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 DOCK6Q96HP0 2047 aa12.8□□□□□ -0.36
CLK3-206ENST00000562078 FAM234BA2RU67 622 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 C2orf78A6NCI8 922 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 H3BNC9 293 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CXCR6O00574 342 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 MYL12BO14950 172 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 TSPAN3O60637 253 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 DIRAS1O95057 198 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 MLYCDO95822 493 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 MYL12AP19105 171 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CLCN5P51795 746 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 GBX2P52951 348 aaPredicted RBP12.79□□□□□ -0.36
CLK3-206ENST00000562078 GRK1Q15835 563 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 PFKFB4Q16877 469 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 ZNF648Q5T619 568 aaPredicted RBP12.79□□□□□ -0.36
CLK3-206ENST00000562078 KLHL17Q6TDP4 642 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 HDDC2Q7Z4H3 204 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 LILRB2Q8N423 598 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 GDPD1Q8N9F7 314 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 OR8K5Q8NH50 307 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 OVCA2Q8WZ82 227 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 GGHQ92820 318 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 RBPMSQ93062 196 aaKnown RBP12.79□□□□□ -0.36
CLK3-206ENST00000562078 WBP2Q969T9 261 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CNPPD1Q9BV87 410 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 HEXA-AS1Q9H8Q6 139 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 TRPM5Q9NZQ8 1165 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 PSORS1C1Q9UIG5 152 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 PDE4DIPQ5VU43 2346 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 SLC7A4O43246 635 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 SERPINA1P01009 418 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 FGF1P05230 155 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CDK1P06493 297 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 HLA-DPA1P20036 260 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 GPC1P35052 558 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 RGRP47804 291 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CLCNKAP51800 687 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 EPHA5P54756 1037 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 CDH4P55283 916 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 RAB25P57735 213 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 RRAS2P62070 204 aaPredicted RBP12.79□□□□□ -0.36
CLK3-206ENST00000562078 PSPHP78330 225 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 BAMBIQ13145 260 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 DOC2BQ14184 412 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 TPGS2Q68CL5 300 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 PIM3Q86V86 326 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 ZFAND4Q86XD8 727 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 BBS7Q8IWZ6 715 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 OR2T11Q8NH01 316 aa12.79□□□□□ -0.36
CLK3-206ENST00000562078 FANK1Q8TC84 345 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms