RNA–Protein interactions for RNA: ENST00000559754.1

SPG11-218, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5

Gene SPG11, Length 411 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-218ENST00000559754 ZNF10P21506 573 aaPredicted RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 SOX6P35712 828 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 PITPNBP48739 271 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 SULT1E1P49888 294 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 SMSP52788 366 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 GBX2P52951 348 aaPredicted RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 MTCP1P56278 107 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 SRP54P61011 504 aaKnown RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 GALK2Q01415 458 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 GCNT1Q02742 428 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 CETN1Q12798 172 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 PDZK1IP1Q13113 114 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 CEBPEQ15744 281 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 MAJINQ3KP22 176 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 LACTB2Q53H82 288 aaPredicted RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 TAF1BQ53T94 588 aaPredicted RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 GCNT6Q5T4J0 391 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 IRGCQ6NXR0 463 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 TRIM65Q6PJ69 517 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 DLEU7Q6UYE1 221 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 WDR88Q6ZMY6 472 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 CCDC73Q6ZRK6 1079 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 C15orf52Q6ZUT6 534 aaKnown RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 TMPRSS11FQ6ZWK6 438 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 LPCAT2Q7L5N7 544 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 AMZ2Q86W34 360 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 MEX3DQ86XN8 651 aaKnown RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 L3MBTL4Q8NA19 623 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 ARHGAP45Q92619 1136 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 GMPPAQ96IJ6 420 aaPredicted RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 ZNF582Q96NG8 517 aaPredicted RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 ATOH8Q96SQ7 321 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 SSX3Q99909 188 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 C17orf62Q9BQA9 187 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 RTP3Q9BQQ7 232 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 ERP44Q9BS26 406 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 BTBD10Q9BSF8 475 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 CARD9Q9H257 536 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 RPF1Q9H9Y2 349 aaKnown RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 KCNMB3Q9NPA1 279 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 FAM212BQ9NTI7 297 aaPredicted RBP3.3□□□□□ -1.88
SPG11-218ENST00000559754 TMOD3Q9NYL9 352 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 TXNDC16Q9P2K2 825 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 SLC7A7Q9UM01 511 aa3.3□□□□□ -1.88
SPG11-218ENST00000559754 CACNA1FO60840 1977 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 HEG1Q9ULI3 1381 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 A0A087WZY1 265 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 A0A0B4J203 849 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 KRTAP16-1A8MUX0 517 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 H7C423 109 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 MAGEB2O15479 319 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 PRAF2O60831 178 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 CRLF1O75462 422 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 NADKO95544 446 aaPredicted RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 MMP10P09238 476 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 SKILP12757 684 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 ZNF18P17022 549 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 ELAVL4P26378 380 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 PIK3R1P27986 724 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 MAGEB1P43366 347 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 RPL21P46778 160 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 HNRNPFP52597 415 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 THOP1P52888 689 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 SLC34A1Q06495 639 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 PPP1R8Q12972 351 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 MRPL28Q13084 256 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 SPP2Q13103 211 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 RIPK1Q13546 671 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 GIT2Q14161 759 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 NPTX1Q15818 432 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 PTGISQ16647 500 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 CTU2Q2VPK5 515 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 RABL6Q3YEC7 729 aaPredicted RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 LRRC23Q53EV4 343 aaPredicted RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 SPATA46Q5T0L3 261 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 CCDC183Q5T5S1 534 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 CENPPQ6IPU0 288 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 KLC3Q6P597 504 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 ARSKQ6UWY0 536 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 B3GLCTQ6Y288 498 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 MACC1Q6ZN28 852 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 ARMCX2Q7L311 632 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 ZNF440Q8IYI8 595 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 RYBPQ8N488 228 aaPredicted RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 VANGL1Q8TAA9 524 aaPredicted RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 CTNNBL1Q8WYA6 563 aaPredicted RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 SYN2Q92777 582 aaPredicted RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 MTERF3Q96E29 417 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 RASL10BQ96S79 203 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 TPPP3Q9BW30 176 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 CARD6Q9BX69 1037 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 SNX25Q9H3E2 840 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.29□□□□□ -1.88
SPG11-218ENST00000559754 MIOSQ9NXC5 875 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 NUDCQ9Y266 331 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 EXOGQ9Y2C4 368 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 DDX49Q9Y6V7 483 aaKnown RBP3.29□□□□□ -1.88
SPG11-218ENST00000559754 KIAA1210Q9ULL0 1709 aa3.29□□□□□ -1.88
SPG11-218ENST00000559754 TRAV24A0A0B4J272 114 aa3.28□□□□□ -1.88
SPG11-218ENST00000559754 PRSS51A0A1B0GVH4 220 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms